Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1911 and DVU1912 are separated by 12 nucleotides DVU1912 and DVU1913 are separated by 58 nucleotides DVU1913 and DVU1914 are separated by 14 nucleotides
DVU1911: DVU1911 - CBS domain protein (TIGR), at 1,986,678 to 1,987,130
DVU1911
DVU1912: DVU1912 - conserved hypothetical protein TIGR00150 (TIGR), at 1,987,143 to 1,987,631
DVU1912
DVU1913: DVU1913 - aspartate kinase, monofunctional class (TIGR), at 1,987,690 to 1,988,916
DVU1913
DVU1914: DVU1914 - (R)-citramalate synthase (EC 2.3.3.21) (from data) , at 1,988,931 to 1,990,547
DVU1914
Position (kb)
1987
1988
1989 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1987.614 kb on - strand at 1987.616 kb on - strand at 1987.625 kb on + strand at 1987.625 kb on + strand at 1988.910 kb on + strand at 1988.980 kb on + strand at 1989.019 kb on + strand at 1989.047 kb on - strand at 1989.056 kb on + strand at 1989.245 kb on - strand, within DVU1914 at 1989.281 kb on - strand, within DVU1914 at 1989.434 kb on + strand, within DVU1914 at 1989.456 kb on - strand, within DVU1914 at 1989.604 kb on - strand, within DVU1914 at 1989.617 kb on + strand, within DVU1914 at 1989.642 kb on + strand, within DVU1914 at 1989.791 kb on + strand, within DVU1914 at 1989.843 kb on + strand, within DVU1914 at 1989.878 kb on - strand, within DVU1914 at 1989.913 kb on + strand, within DVU1914
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 1,987,614 - -0.6 1,987,616 - -1.0 1,987,625 + -0.0 1,987,625 + -0.2 1,988,910 + -0.5 1,988,980 + -4.9 1,989,019 + -1.6 1,989,047 - -3.5 1,989,056 + -3.4 1,989,245 - DVU1914 0.19 -3.6 1,989,281 - DVU1914 0.22 -4.3 1,989,434 + DVU1914 0.31 -5.2 1,989,456 - DVU1914 0.32 -1.2 1,989,604 - DVU1914 0.42 -3.8 1,989,617 + DVU1914 0.42 -4.6 1,989,642 + DVU1914 0.44 -4.4 1,989,791 + DVU1914 0.53 +1.0 1,989,843 + DVU1914 0.56 -4.0 1,989,878 - DVU1914 0.59 -3.7 1,989,913 + DVU1914 0.61 -1.3
Or see this region's nucleotide sequence