Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0876 and DVU0878 are separated by 472 nucleotides DVU0878 and DORF7930 are separated by 102 nucleotides DORF7930 and DVU0880 are separated by 13 nucleotides
DVU0876: DVU0876 - metallo-beta-lactamase family protein (TIGR), at 967,948 to 969,612
DVU0876
DVU0878: DVU0878 - dnaK suppressor protein, putative (TIGR), at 970,085 to 970,441
DVU0878
DORF7930: DORF7930 - no description, at 970,544 to 970,678
DORF7930
DVU0880: DVU0880 - hypothetical protein (TIGR), at 970,692 to 970,976
DVU0880
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.085 kb on + strand, within DVU0876 at 969.135 kb on - strand, within DVU0876 at 969.166 kb on + strand, within DVU0876 at 969.258 kb on + strand, within DVU0876 at 969.278 kb on - strand, within DVU0876 at 969.310 kb on - strand, within DVU0876 at 969.312 kb on + strand, within DVU0876 at 969.336 kb on - strand, within DVU0876 at 969.357 kb on - strand, within DVU0876 at 969.359 kb on + strand, within DVU0876 at 969.382 kb on + strand, within DVU0876 at 969.417 kb on + strand, within DVU0876 at 969.474 kb on + strand at 969.508 kb on + strand at 969.516 kb on - strand at 969.521 kb on - strand at 969.546 kb on - strand at 969.592 kb on + strand at 969.597 kb on - strand at 969.771 kb on - strand at 969.856 kb on + strand at 969.918 kb on + strand at 969.936 kb on + strand at 969.995 kb on + strand at 970.001 kb on + strand at 970.128 kb on + strand, within DVU0878 at 970.162 kb on + strand, within DVU0878 at 970.189 kb on + strand, within DVU0878 at 970.207 kb on - strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.231 kb on - strand, within DVU0878 at 970.234 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.290 kb on + strand, within DVU0878 at 970.308 kb on - strand, within DVU0878 at 970.387 kb on + strand, within DVU0878 at 970.410 kb on - strand at 970.412 kb on + strand at 970.422 kb on - strand at 970.450 kb on - strand at 970.538 kb on + strand at 970.541 kb on - strand at 970.601 kb on - strand, within DORF7930 at 970.608 kb on - strand, within DORF7930 at 970.753 kb on + strand, within DVU0880 at 970.829 kb on + strand, within DVU0880 at 970.860 kb on + strand, within DVU0880 at 970.890 kb on - strand, within DVU0880 at 970.890 kb on - strand, within DVU0880 at 970.900 kb on - strand, within DVU0880 at 970.938 kb on - strand, within DVU0880 at 970.975 kb on + strand at 971.123 kb on + strand at 971.128 kb on - strand at 971.133 kb on - strand at 971.269 kb on + strand at 971.269 kb on + strand at 971.335 kb on + strand at 971.343 kb on - strand at 971.349 kb on + strand at 971.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 969,085 + DVU0876 0.68 -2.1 969,135 - DVU0876 0.71 -1.5 969,166 + DVU0876 0.73 -1.5 969,258 + DVU0876 0.79 -0.3 969,278 - DVU0876 0.80 -0.9 969,310 - DVU0876 0.82 -1.6 969,312 + DVU0876 0.82 -1.4 969,336 - DVU0876 0.83 -1.5 969,357 - DVU0876 0.85 -1.4 969,359 + DVU0876 0.85 -0.8 969,382 + DVU0876 0.86 -1.6 969,417 + DVU0876 0.88 -2.5 969,474 + -2.2 969,508 + +0.6 969,516 - +0.3 969,521 - -2.1 969,546 - -1.7 969,592 + -2.1 969,597 - -2.1 969,771 - -0.3 969,856 + +0.2 969,918 + +0.3 969,936 + -0.0 969,995 + -0.4 970,001 + -0.0 970,128 + DVU0878 0.12 -0.4 970,162 + DVU0878 0.22 -0.2 970,189 + DVU0878 0.29 +2.7 970,207 - DVU0878 0.34 -0.1 970,223 + DVU0878 0.39 -0.4 970,223 + DVU0878 0.39 -0.2 970,223 + DVU0878 0.39 -0.3 970,231 - DVU0878 0.41 -0.4 970,234 + DVU0878 0.42 -0.7 970,254 + DVU0878 0.47 -0.3 970,254 + DVU0878 0.47 +1.4 970,254 + DVU0878 0.47 -0.3 970,254 + DVU0878 0.47 +2.9 970,262 - DVU0878 0.50 +0.2 970,262 - DVU0878 0.50 +0.4 970,262 - DVU0878 0.50 -0.4 970,262 - DVU0878 0.50 +0.3 970,290 + DVU0878 0.57 +0.1 970,308 - DVU0878 0.62 -0.2 970,387 + DVU0878 0.85 -0.1 970,410 - -0.8 970,412 + -0.1 970,422 - -0.1 970,450 - +1.3 970,538 + +0.0 970,541 - -0.2 970,601 - DORF7930 0.42 -0.3 970,608 - DORF7930 0.47 -0.2 970,753 + DVU0880 0.21 -0.4 970,829 + DVU0880 0.48 -0.5 970,860 + DVU0880 0.59 +1.3 970,890 - DVU0880 0.69 +2.4 970,890 - DVU0880 0.69 -0.1 970,900 - DVU0880 0.73 -0.9 970,938 - DVU0880 0.86 -0.0 970,975 + -1.5 971,123 + -0.1 971,128 - -0.4 971,133 - +0.7 971,269 + -0.1 971,269 + +0.5 971,335 + -2.4 971,343 - -0.5 971,349 + -0.3 971,417 + -1.6
Or see this region's nucleotide sequence