Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0875 and DVU0876 are separated by 27 nucleotides DVU0876 and DVU0878 are separated by 472 nucleotides DVU0878 and DORF7930 are separated by 102 nucleotides
DVU0875: DVU0875 - fumarylacetoacetate hydrolase family protein (TIGR), at 967,141 to 967,920
DVU0875
DVU0876: DVU0876 - metallo-beta-lactamase family protein (TIGR), at 967,948 to 969,612
DVU0876
DVU0878: DVU0878 - dnaK suppressor protein, putative (TIGR), at 970,085 to 970,441
DVU0878
DORF7930: DORF7930 - no description, at 970,544 to 970,678
DORF7930
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 967.130 kb on - strand at 967.130 kb on - strand at 967.142 kb on + strand at 967.273 kb on + strand, within DVU0875 at 967.278 kb on + strand, within DVU0875 at 967.286 kb on - strand, within DVU0875 at 967.286 kb on - strand, within DVU0875 at 967.337 kb on + strand, within DVU0875 at 967.366 kb on - strand, within DVU0875 at 967.384 kb on + strand, within DVU0875 at 967.392 kb on - strand, within DVU0875 at 967.399 kb on - strand, within DVU0875 at 967.401 kb on + strand, within DVU0875 at 967.409 kb on - strand, within DVU0875 at 967.409 kb on - strand, within DVU0875 at 967.417 kb on + strand, within DVU0875 at 967.462 kb on + strand, within DVU0875 at 967.469 kb on + strand, within DVU0875 at 967.469 kb on + strand, within DVU0875 at 967.470 kb on - strand, within DVU0875 at 967.470 kb on - strand, within DVU0875 at 967.478 kb on + strand, within DVU0875 at 967.533 kb on - strand, within DVU0875 at 967.557 kb on - strand, within DVU0875 at 967.623 kb on + strand, within DVU0875 at 967.758 kb on - strand, within DVU0875 at 967.926 kb on + strand at 967.971 kb on + strand at 968.098 kb on - strand at 968.175 kb on + strand, within DVU0876 at 968.271 kb on - strand, within DVU0876 at 968.278 kb on - strand, within DVU0876 at 968.290 kb on + strand, within DVU0876 at 968.422 kb on + strand, within DVU0876 at 968.545 kb on - strand, within DVU0876 at 968.552 kb on - strand, within DVU0876 at 968.605 kb on + strand, within DVU0876 at 968.647 kb on + strand, within DVU0876 at 968.704 kb on - strand, within DVU0876 at 968.754 kb on + strand, within DVU0876 at 968.909 kb on - strand, within DVU0876 at 969.000 kb on - strand, within DVU0876 at 969.045 kb on - strand, within DVU0876 at 969.085 kb on + strand, within DVU0876 at 969.135 kb on - strand, within DVU0876 at 969.166 kb on + strand, within DVU0876 at 969.258 kb on + strand, within DVU0876 at 969.278 kb on - strand, within DVU0876 at 969.310 kb on - strand, within DVU0876 at 969.312 kb on + strand, within DVU0876 at 969.336 kb on - strand, within DVU0876 at 969.357 kb on - strand, within DVU0876 at 969.359 kb on + strand, within DVU0876 at 969.382 kb on + strand, within DVU0876 at 969.417 kb on + strand, within DVU0876 at 969.474 kb on + strand at 969.508 kb on + strand at 969.516 kb on - strand at 969.521 kb on - strand at 969.546 kb on - strand at 969.592 kb on + strand at 969.597 kb on - strand at 969.771 kb on - strand at 969.856 kb on + strand at 969.918 kb on + strand at 969.936 kb on + strand at 969.995 kb on + strand at 970.001 kb on + strand at 970.128 kb on + strand, within DVU0878 at 970.162 kb on + strand, within DVU0878 at 970.189 kb on + strand, within DVU0878 at 970.207 kb on - strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.223 kb on + strand, within DVU0878 at 970.231 kb on - strand, within DVU0878 at 970.234 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.254 kb on + strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.262 kb on - strand, within DVU0878 at 970.290 kb on + strand, within DVU0878 at 970.308 kb on - strand, within DVU0878 at 970.387 kb on + strand, within DVU0878 at 970.410 kb on - strand at 970.412 kb on + strand at 970.422 kb on - strand at 970.450 kb on - strand at 970.538 kb on + strand at 970.541 kb on - strand at 970.601 kb on - strand, within DORF7930 at 970.608 kb on - strand, within DORF7930
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 967,130 - +1.9 967,130 - -0.3 967,142 + -0.3 967,273 + DVU0875 0.17 -0.7 967,278 + DVU0875 0.18 -0.5 967,286 - DVU0875 0.19 +1.3 967,286 - DVU0875 0.19 -0.1 967,337 + DVU0875 0.25 +0.2 967,366 - DVU0875 0.29 -0.1 967,384 + DVU0875 0.31 -0.9 967,392 - DVU0875 0.32 -1.2 967,399 - DVU0875 0.33 +0.4 967,401 + DVU0875 0.33 +0.6 967,409 - DVU0875 0.34 -0.3 967,409 - DVU0875 0.34 -0.1 967,417 + DVU0875 0.35 +2.6 967,462 + DVU0875 0.41 -0.8 967,469 + DVU0875 0.42 -1.8 967,469 + DVU0875 0.42 -0.5 967,470 - DVU0875 0.42 -0.9 967,470 - DVU0875 0.42 -1.3 967,478 + DVU0875 0.43 -0.5 967,533 - DVU0875 0.50 -0.3 967,557 - DVU0875 0.53 -0.8 967,623 + DVU0875 0.62 -0.8 967,758 - DVU0875 0.79 -0.1 967,926 + -1.0 967,971 + -1.1 968,098 - -5.0 968,175 + DVU0876 0.14 -0.8 968,271 - DVU0876 0.19 -2.8 968,278 - DVU0876 0.20 -1.7 968,290 + DVU0876 0.21 -0.9 968,422 + DVU0876 0.28 -0.9 968,545 - DVU0876 0.36 -1.4 968,552 - DVU0876 0.36 -1.3 968,605 + DVU0876 0.39 -2.0 968,647 + DVU0876 0.42 -2.0 968,704 - DVU0876 0.45 +0.9 968,754 + DVU0876 0.48 -2.7 968,909 - DVU0876 0.58 -1.8 969,000 - DVU0876 0.63 -1.2 969,045 - DVU0876 0.66 -1.3 969,085 + DVU0876 0.68 -2.1 969,135 - DVU0876 0.71 -1.5 969,166 + DVU0876 0.73 -1.5 969,258 + DVU0876 0.79 -0.3 969,278 - DVU0876 0.80 -0.9 969,310 - DVU0876 0.82 -1.6 969,312 + DVU0876 0.82 -1.4 969,336 - DVU0876 0.83 -1.5 969,357 - DVU0876 0.85 -1.4 969,359 + DVU0876 0.85 -0.8 969,382 + DVU0876 0.86 -1.6 969,417 + DVU0876 0.88 -2.5 969,474 + -2.2 969,508 + +0.6 969,516 - +0.3 969,521 - -2.1 969,546 - -1.7 969,592 + -2.1 969,597 - -2.1 969,771 - -0.3 969,856 + +0.2 969,918 + +0.3 969,936 + -0.0 969,995 + -0.4 970,001 + -0.0 970,128 + DVU0878 0.12 -0.4 970,162 + DVU0878 0.22 -0.2 970,189 + DVU0878 0.29 +2.7 970,207 - DVU0878 0.34 -0.1 970,223 + DVU0878 0.39 -0.4 970,223 + DVU0878 0.39 -0.2 970,223 + DVU0878 0.39 -0.3 970,231 - DVU0878 0.41 -0.4 970,234 + DVU0878 0.42 -0.7 970,254 + DVU0878 0.47 -0.3 970,254 + DVU0878 0.47 +1.4 970,254 + DVU0878 0.47 -0.3 970,254 + DVU0878 0.47 +2.9 970,262 - DVU0878 0.50 +0.2 970,262 - DVU0878 0.50 +0.4 970,262 - DVU0878 0.50 -0.4 970,262 - DVU0878 0.50 +0.3 970,290 + DVU0878 0.57 +0.1 970,308 - DVU0878 0.62 -0.2 970,387 + DVU0878 0.85 -0.1 970,410 - -0.8 970,412 + -0.1 970,422 - -0.1 970,450 - +1.3 970,538 + +0.0 970,541 - -0.2 970,601 - DORF7930 0.42 -0.3 970,608 - DORF7930 0.47 -0.2
Or see this region's nucleotide sequence