Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1616

Experiment: BG11 with Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_1613 and rpmH are separated by 47 nucleotidesrpmH and rnpA are separated by 5 nucleotidesrnpA and Synpcc7942_1616 overlap by 14 nucleotidesSynpcc7942_1616 and yidC are separated by 202 nucleotides Synpcc7942_1613: Synpcc7942_1613 - hypothetical protein, at 1,682,042 to 1,682,617 _1613 Synpcc7942_1614: rpmH - 50S ribosomal protein L34, at 1,682,665 to 1,682,802 rpmH Synpcc7942_1615: rnpA - ribonuclease P, at 1,682,808 to 1,683,176 rnpA Synpcc7942_1616: Synpcc7942_1616 - hypothetical protein, at 1,683,163 to 1,683,549 _1616 Synpcc7942_1617: yidC - putative inner membrane protein translocase component YidC, at 1,683,752 to 1,684,930 yidC Position (kb) 1683 1684Strain fitness (log2 ratio) -2 -1 0 1at 1682.805 kb on - strandat 1683.190 kb on - strandat 1683.201 kb on + strandat 1683.209 kb on - strand, within Synpcc7942_1616at 1683.258 kb on - strand, within Synpcc7942_1616at 1683.263 kb on - strand, within Synpcc7942_1616at 1683.573 kb on + strandat 1683.581 kb on - strandat 1683.581 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml
remove
1,682,805 - -1.9
1,683,190 - -0.3
1,683,201 + -1.7
1,683,209 - Synpcc7942_1616 0.12 -1.3
1,683,258 - Synpcc7942_1616 0.25 -2.3
1,683,263 - Synpcc7942_1616 0.26 -0.1
1,683,573 + -0.7
1,683,581 - -1.1
1,683,581 - -1.4

Or see this region's nucleotide sequence