Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1468 and Synpcc7942_1469 overlap by 4 nucleotides Synpcc7942_1469 and Synpcc7942_1470 overlap by 8 nucleotides Synpcc7942_1470 and Synpcc7942_1471 overlap by 4 nucleotides Synpcc7942_1471 and Synpcc7942_1472 overlap by 4 nucleotides Synpcc7942_1472 and ndhD5 overlap by 4 nucleotides
Synpcc7942_1468: Synpcc7942_1468 - putative monovalent cation/H+ antiporter subunit B, at 1,521,482 to 1,522,141
_1468
Synpcc7942_1469: Synpcc7942_1469 - hypothetical protein, at 1,522,138 to 1,522,719
_1469
Synpcc7942_1470: Synpcc7942_1470 - hypothetical protein, at 1,522,712 to 1,523,005
_1470
Synpcc7942_1471: Synpcc7942_1471 - hypothetical protein, at 1,523,002 to 1,523,259
_1471
Synpcc7942_1472: Synpcc7942_1472 - hypothetical protein, at 1,523,256 to 1,523,642
_1472
Synpcc7942_1473: ndhD5 - putative monovalent cation/H+ antiporter subunit D, at 1,523,639 to 1,525,081
ndhD5
Position (kb) 1522
1523
1524 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 1521.795 kb on - strand, within Synpcc7942_1468 at 1522.284 kb on + strand, within Synpcc7942_1469 at 1522.332 kb on - strand, within Synpcc7942_1469 at 1522.332 kb on - strand, within Synpcc7942_1469 at 1522.486 kb on + strand, within Synpcc7942_1469 at 1522.530 kb on - strand, within Synpcc7942_1469 at 1522.541 kb on - strand, within Synpcc7942_1469 at 1522.580 kb on + strand, within Synpcc7942_1469 at 1522.587 kb on - strand, within Synpcc7942_1469 at 1522.587 kb on - strand, within Synpcc7942_1469 at 1522.587 kb on - strand, within Synpcc7942_1469 at 1522.587 kb on - strand, within Synpcc7942_1469 at 1522.587 kb on - strand, within Synpcc7942_1469 at 1522.589 kb on + strand, within Synpcc7942_1469 at 1522.597 kb on - strand, within Synpcc7942_1469 at 1522.597 kb on - strand, within Synpcc7942_1469 at 1522.720 kb on + strand at 1522.784 kb on + strand, within Synpcc7942_1470 at 1522.944 kb on - strand, within Synpcc7942_1470 at 1523.284 kb on + strand at 1523.330 kb on - strand, within Synpcc7942_1472 at 1523.378 kb on + strand, within Synpcc7942_1472 at 1523.854 kb on + strand, within ndhD5
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 1,521,795 - Synpcc7942_1468 0.47 -2.2 1,522,284 + Synpcc7942_1469 0.25 -2.2 1,522,332 - Synpcc7942_1469 0.33 -2.5 1,522,332 - Synpcc7942_1469 0.33 -1.0 1,522,486 + Synpcc7942_1469 0.60 -2.9 1,522,530 - Synpcc7942_1469 0.67 -2.0 1,522,541 - Synpcc7942_1469 0.69 -3.0 1,522,580 + Synpcc7942_1469 0.76 -5.0 1,522,587 - Synpcc7942_1469 0.77 -2.9 1,522,587 - Synpcc7942_1469 0.77 -1.6 1,522,587 - Synpcc7942_1469 0.77 -4.0 1,522,587 - Synpcc7942_1469 0.77 -3.0 1,522,587 - Synpcc7942_1469 0.77 -0.9 1,522,589 + Synpcc7942_1469 0.77 -2.9 1,522,597 - Synpcc7942_1469 0.79 -3.1 1,522,597 - Synpcc7942_1469 0.79 -6.9 1,522,720 + -1.0 1,522,784 + Synpcc7942_1470 0.24 -2.0 1,522,944 - Synpcc7942_1470 0.79 -3.3 1,523,284 + -4.0 1,523,330 - Synpcc7942_1472 0.19 -4.0 1,523,378 + Synpcc7942_1472 0.32 -3.3 1,523,854 + ndhD5 Synpcc7942_1473 0.15 -2.6
Or see this region's nucleotide sequence