Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1438

Experiment: BG11 with Cisplatin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with Cisplatin 0.05 mg/ml
1,490,877	+		Synpcc7942_1436	0.26	+1.6
1,490,877	+		Synpcc7942_1436	0.26	+0.4
1,490,877	+		Synpcc7942_1436	0.26	+3.0
1,490,884	+		Synpcc7942_1436	0.28	+1.9
1,490,885	-		Synpcc7942_1436	0.28	+0.8
1,490,885	-		Synpcc7942_1436	0.28	+1.8
1,490,890	+		Synpcc7942_1436	0.29	+1.5
1,490,892	-		Synpcc7942_1436	0.30	+3.1
1,490,899	-		Synpcc7942_1436	0.31	+2.4
1,490,915	-		Synpcc7942_1436	0.35	+2.1
1,490,938	-		Synpcc7942_1436	0.40	+2.4
1,490,981	-		Synpcc7942_1436	0.50	+2.8
1,491,003	-		Synpcc7942_1436	0.55	+1.5
1,491,003	-		Synpcc7942_1436	0.55	+2.5
1,491,027	-		Synpcc7942_1436	0.60	+1.6
1,491,041	+		Synpcc7942_1436	0.63	+1.0
1,491,063	-		Synpcc7942_1436	0.68	+2.7
1,491,063	-		Synpcc7942_1436	0.68	+2.3
1,491,081	-		Synpcc7942_1436	0.72	+0.4
1,491,140	-		Synpcc7942_1436	0.85	+1.0
1,491,154	+		Synpcc7942_1436	0.88	+1.0
1,491,162	-				+1.5
1,491,197	+				+0.9
1,491,202	+				-0.9
1,491,202	+				+1.0
1,491,202	+				-0.1
1,491,209	+				+0.6
1,491,209	+				+1.3
1,491,209	+				-1.4
1,491,209	+				+0.2
1,491,210	-				+0.1
1,491,214	+				+0.2
1,491,214	+				+0.2
1,491,237	+				-0.2
1,491,248	+				+0.8
1,491,266	-				+0.7
1,491,275	+				-0.6
1,491,280	+				+0.2
1,491,283	-				-0.3
1,491,298	+				+0.7
1,491,299	-				+0.1
1,491,325	-		Synpcc7942_1437	0.14	+0.0
1,491,325	-		Synpcc7942_1437	0.14	-0.1
1,491,330	-		Synpcc7942_1437	0.16	+1.9
1,491,429	-		Synpcc7942_1437	0.51	-0.9
1,491,459	-		Synpcc7942_1437	0.62	+0.2
1,491,484	+		Synpcc7942_1437	0.71	-0.6
1,491,484	+		Synpcc7942_1437	0.71	+0.1
1,491,484	+		Synpcc7942_1437	0.71	-0.3
1,491,506	+		Synpcc7942_1437	0.79	+0.2
1,491,514	-		Synpcc7942_1437	0.82	-0.2
1,491,514	-		Synpcc7942_1437	0.82	+0.5
1,491,519	-		Synpcc7942_1437	0.84	+0.2
1,491,565	+				+0.8
1,491,565	+				+0.9
1,491,566	-				-0.5
1,491,573	-				+0.5
1,491,577	+				-0.2
1,491,577	+				+0.1
1,491,577	+				-0.1
1,491,599	-				+0.3
1,491,605	+				-0.0
1,491,609	+				+1.2
1,491,621	-				+0.1
1,491,623	-				-0.7
1,491,633	+				-0.7
1,491,659	+				-0.2
1,491,667	-				-0.9
1,491,667	-				-0.3
1,491,667	-				+0.9
1,491,745	+				+1.3
1,491,745	+				+0.9
1,491,753	-				-0.8
1,491,753	-				-0.1
1,491,753	-				+0.1
1,491,753	-				-0.1
1,491,753	-				+1.2
1,491,756	+				-0.1
1,491,764	-				+1.2
1,491,802	-				-0.6
1,491,866	-	nblC	Synpcc7942_1438	0.14	+0.3
1,491,869	+	nblC	Synpcc7942_1438	0.15	-0.6
1,491,893	-				-0.2
1,491,951	+	nblC	Synpcc7942_1438	0.31	-1.8
1,491,993	-	nblC	Synpcc7942_1438	0.40	-4.5
1,492,024	-	nblC	Synpcc7942_1438	0.46	-0.6
1,492,029	-	nblC	Synpcc7942_1438	0.47	-0.4
1,492,029	-	nblC	Synpcc7942_1438	0.47	-2.2
1,492,038	+	nblC	Synpcc7942_1438	0.49	-0.9
1,492,043	-	nblC	Synpcc7942_1438	0.50	-2.1
1,492,081	+	nblC	Synpcc7942_1438	0.58	-0.9
1,492,084	-	nblC	Synpcc7942_1438	0.58	-2.7
1,492,092	+	nblC	Synpcc7942_1438	0.60	-1.1
1,492,092	+	nblC	Synpcc7942_1438	0.60	-0.8
1,492,108	+	nblC	Synpcc7942_1438	0.63	-2.5
1,492,168	+	nblC	Synpcc7942_1438	0.75	-0.8
1,492,193	+	nblC	Synpcc7942_1438	0.80	-0.1
1,492,210	+	nblC	Synpcc7942_1438	0.84	-1.9
1,492,216	+	nblC	Synpcc7942_1438	0.85	-1.7
1,492,229	-	nblC	Synpcc7942_1438	0.87	-1.6
1,492,247	+				-1.2
1,492,256	+				-0.8
1,492,263	+				-0.7
1,492,263	+				+0.8
1,492,264	-				-0.4
1,492,279	+				+0.8
1,492,317	-				-0.5
1,492,321	-				-0.4
1,492,322	-				+0.8
1,492,325	+				-0.2
1,492,350	-				+0.0
1,492,355	-				+0.4
1,492,383	-				+0.2
1,492,387	+				+1.2
1,492,394	-				-1.0
1,492,394	-				-0.0
1,492,459	-				-0.3
1,492,468	+				-0.1
1,492,468	+				-0.1
1,492,502	-				+0.1
1,492,539	+				-0.1
1,492,542	+				-0.3
1,492,552	+				+0.3
1,492,574	+				-0.6
1,492,576	+				+1.2
1,492,582	-				-2.1
1,492,582	-				+0.0
1,492,674	+	ndhD2	Synpcc7942_1439	0.15	+0.1
1,492,677	-	ndhD2	Synpcc7942_1439	0.15	-0.7
1,492,677	-	ndhD2	Synpcc7942_1439	0.15	+0.3
1,492,677	-	ndhD2	Synpcc7942_1439	0.15	+0.7
1,492,677	-	ndhD2	Synpcc7942_1439	0.15	+0.7
1,492,693	+	ndhD2	Synpcc7942_1439	0.16	-1.1
1,492,694	-	ndhD2	Synpcc7942_1439	0.17	+0.2
1,492,724	+	ndhD2	Synpcc7942_1439	0.18	-1.6
1,492,724	+	ndhD2	Synpcc7942_1439	0.18	-0.5
1,492,806	-	ndhD2	Synpcc7942_1439	0.24	+0.2
1,492,830	+	ndhD2	Synpcc7942_1439	0.25	-0.1
1,492,874	-	ndhD2	Synpcc7942_1439	0.28	-0.1
1,492,874	-				-1.1
1,492,874	-	ndhD2	Synpcc7942_1439	0.28	-1.3
1,492,874	-				+1.4
1,492,882	+	ndhD2	Synpcc7942_1439	0.28	-1.2
1,492,899	-	ndhD2	Synpcc7942_1439	0.29	+0.3
1,492,932	-	ndhD2	Synpcc7942_1439	0.31	+1.0
1,492,936	+	ndhD2	Synpcc7942_1439	0.32	+0.6
1,492,955	+	ndhD2	Synpcc7942_1439	0.33	+0.2
1,492,963	-	ndhD2	Synpcc7942_1439	0.33	-1.1
1,493,010	+	ndhD2	Synpcc7942_1439	0.36	-1.3
1,493,010	+	ndhD2	Synpcc7942_1439	0.36	+1.1
1,493,018	-	ndhD2	Synpcc7942_1439	0.37	-2.3
1,493,034	-	ndhD2	Synpcc7942_1439	0.38	+0.3
1,493,036	+	ndhD2	Synpcc7942_1439	0.38	-0.4
1,493,107	-	ndhD2	Synpcc7942_1439	0.42	-2.2
1,493,131	+	ndhD2	Synpcc7942_1439	0.44	+1.0
1,493,143	+	ndhD2	Synpcc7942_1439	0.45	-0.2
1,493,232	+	ndhD2	Synpcc7942_1439	0.50	+0.3
1,493,263	+	ndhD2	Synpcc7942_1439	0.52	-0.1