Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0825

Experiment: BG11 with Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0824 and Synpcc7942_0825 are separated by 60 nucleotidesSynpcc7942_0825 and Synpcc7942_0826 are separated by 38 nucleotides Synpcc7942_0824: Synpcc7942_0824 - hypothetical protein, at 818,189 to 819,895 _0824 Synpcc7942_0825: Synpcc7942_0825 - hypothetical protein, at 819,956 to 820,654 _0825 Synpcc7942_0826: Synpcc7942_0826 - hypothetical protein, at 820,693 to 821,628 _0826 Position (kb) 819 820 821Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 818.964 kb on - strand, within Synpcc7942_0824at 818.969 kb on - strand, within Synpcc7942_0824at 818.985 kb on + strand, within Synpcc7942_0824at 818.985 kb on + strand, within Synpcc7942_0824at 818.993 kb on - strand, within Synpcc7942_0824at 818.993 kb on - strand, within Synpcc7942_0824at 818.993 kb on - strand, within Synpcc7942_0824at 818.993 kb on - strand, within Synpcc7942_0824at 819.116 kb on - strand, within Synpcc7942_0824at 819.116 kb on - strand, within Synpcc7942_0824at 819.160 kb on - strand, within Synpcc7942_0824at 819.175 kb on + strand, within Synpcc7942_0824at 819.211 kb on + strand, within Synpcc7942_0824at 819.216 kb on + strand, within Synpcc7942_0824at 819.224 kb on + strand, within Synpcc7942_0824at 819.231 kb on + strand, within Synpcc7942_0824at 819.231 kb on + strand, within Synpcc7942_0824at 819.231 kb on + strand, within Synpcc7942_0824at 819.232 kb on - strand, within Synpcc7942_0824at 819.232 kb on - strand, within Synpcc7942_0824at 819.239 kb on - strand, within Synpcc7942_0824at 819.239 kb on - strand, within Synpcc7942_0824at 819.239 kb on - strand, within Synpcc7942_0824at 819.303 kb on + strand, within Synpcc7942_0824at 819.460 kb on - strand, within Synpcc7942_0824at 819.516 kb on + strand, within Synpcc7942_0824at 819.555 kb on + strand, within Synpcc7942_0824at 819.610 kb on + strand, within Synpcc7942_0824at 819.633 kb on + strand, within Synpcc7942_0824at 819.708 kb on + strand, within Synpcc7942_0824at 819.761 kb on - strandat 819.792 kb on + strandat 819.800 kb on - strandat 819.818 kb on + strandat 819.818 kb on + strandat 820.229 kb on - strand, within Synpcc7942_0825at 820.349 kb on + strand, within Synpcc7942_0825at 820.463 kb on + strand, within Synpcc7942_0825at 820.623 kb on + strandat 820.623 kb on + strandat 820.647 kb on - strandat 820.671 kb on - strandat 820.701 kb on - strandat 820.731 kb on + strandat 820.748 kb on + strandat 820.752 kb on + strandat 820.797 kb on + strand, within Synpcc7942_0826at 820.797 kb on + strand, within Synpcc7942_0826at 820.805 kb on - strand, within Synpcc7942_0826at 820.805 kb on - strand, within Synpcc7942_0826at 820.805 kb on - strand, within Synpcc7942_0826at 820.833 kb on - strand, within Synpcc7942_0826at 820.859 kb on + strand, within Synpcc7942_0826at 820.868 kb on - strand, within Synpcc7942_0826at 820.883 kb on + strand, within Synpcc7942_0826at 820.883 kb on + strand, within Synpcc7942_0826at 820.900 kb on + strand, within Synpcc7942_0826at 820.908 kb on + strand, within Synpcc7942_0826at 820.922 kb on + strand, within Synpcc7942_0826at 820.933 kb on + strand, within Synpcc7942_0826at 820.943 kb on - strand, within Synpcc7942_0826at 820.959 kb on - strand, within Synpcc7942_0826at 820.961 kb on + strand, within Synpcc7942_0826at 820.978 kb on + strand, within Synpcc7942_0826at 820.986 kb on - strand, within Synpcc7942_0826at 820.986 kb on - strand, within Synpcc7942_0826at 820.988 kb on + strand, within Synpcc7942_0826at 820.990 kb on - strand, within Synpcc7942_0826at 820.996 kb on - strand, within Synpcc7942_0826at 821.038 kb on + strand, within Synpcc7942_0826at 821.307 kb on + strand, within Synpcc7942_0826at 821.315 kb on - strand, within Synpcc7942_0826at 821.451 kb on + strand, within Synpcc7942_0826at 821.456 kb on + strand, within Synpcc7942_0826at 821.457 kb on + strand, within Synpcc7942_0826at 821.457 kb on + strand, within Synpcc7942_0826at 821.461 kb on + strand, within Synpcc7942_0826at 821.464 kb on - strand, within Synpcc7942_0826at 821.465 kb on - strand, within Synpcc7942_0826at 821.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml
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818,964 - Synpcc7942_0824 0.45 +0.2
818,969 - Synpcc7942_0824 0.46 -0.8
818,985 + Synpcc7942_0824 0.47 -0.2
818,985 + Synpcc7942_0824 0.47 +1.1
818,993 - Synpcc7942_0824 0.47 -0.6
818,993 - Synpcc7942_0824 0.47 -0.5
818,993 - Synpcc7942_0824 0.47 +0.1
818,993 - Synpcc7942_0824 0.47 +0.4
819,116 - Synpcc7942_0824 0.54 -0.1
819,116 - Synpcc7942_0824 0.54 -2.0
819,160 - Synpcc7942_0824 0.57 +0.0
819,175 + Synpcc7942_0824 0.58 -0.5
819,211 + Synpcc7942_0824 0.60 +0.4
819,216 + Synpcc7942_0824 0.60 -1.3
819,224 + Synpcc7942_0824 0.61 +0.0
819,231 + Synpcc7942_0824 0.61 -1.7
819,231 + Synpcc7942_0824 0.61 -0.1
819,231 + Synpcc7942_0824 0.61 +0.7
819,232 - Synpcc7942_0824 0.61 +0.8
819,232 - Synpcc7942_0824 0.61 +0.7
819,239 - Synpcc7942_0824 0.62 +0.2
819,239 - Synpcc7942_0824 0.62 +0.4
819,239 - Synpcc7942_0824 0.62 -0.6
819,303 + Synpcc7942_0824 0.65 +0.4
819,460 - Synpcc7942_0824 0.74 -0.8
819,516 + Synpcc7942_0824 0.78 +0.4
819,555 + Synpcc7942_0824 0.80 -1.6
819,610 + Synpcc7942_0824 0.83 -0.9
819,633 + Synpcc7942_0824 0.85 +0.1
819,708 + Synpcc7942_0824 0.89 +0.3
819,761 - -1.5
819,792 + -0.0
819,800 - -0.6
819,818 + +0.2
819,818 + +0.5
820,229 - Synpcc7942_0825 0.39 -3.9
820,349 + Synpcc7942_0825 0.56 -2.5
820,463 + Synpcc7942_0825 0.73 -2.3
820,623 + -2.7
820,623 + -2.6
820,647 - -1.8
820,671 - -1.3
820,701 - -0.1
820,731 + -1.9
820,748 + +0.3
820,752 + -2.1
820,797 + Synpcc7942_0826 0.11 -1.5
820,797 + Synpcc7942_0826 0.11 -1.8
820,805 - Synpcc7942_0826 0.12 -0.8
820,805 - Synpcc7942_0826 0.12 -2.0
820,805 - Synpcc7942_0826 0.12 +0.1
820,833 - Synpcc7942_0826 0.15 -1.8
820,859 + Synpcc7942_0826 0.18 -1.3
820,868 - Synpcc7942_0826 0.19 -1.8
820,883 + Synpcc7942_0826 0.20 -0.9
820,883 + Synpcc7942_0826 0.20 -2.3
820,900 + Synpcc7942_0826 0.22 +0.2
820,908 + Synpcc7942_0826 0.23 +0.9
820,922 + Synpcc7942_0826 0.24 -1.3
820,933 + Synpcc7942_0826 0.26 -1.9
820,943 - Synpcc7942_0826 0.27 -1.1
820,959 - Synpcc7942_0826 0.28 -0.8
820,961 + Synpcc7942_0826 0.29 -0.9
820,978 + Synpcc7942_0826 0.30 -1.4
820,986 - Synpcc7942_0826 0.31 -0.9
820,986 - Synpcc7942_0826 0.31 -1.3
820,988 + Synpcc7942_0826 0.32 -1.1
820,990 - Synpcc7942_0826 0.32 -0.6
820,996 - Synpcc7942_0826 0.32 -1.0
821,038 + Synpcc7942_0826 0.37 -1.2
821,307 + Synpcc7942_0826 0.66 -1.8
821,315 - Synpcc7942_0826 0.66 -0.6
821,451 + Synpcc7942_0826 0.81 -1.9
821,456 + Synpcc7942_0826 0.82 -1.5
821,457 + Synpcc7942_0826 0.82 -0.1
821,457 + Synpcc7942_0826 0.82 -1.0
821,461 + Synpcc7942_0826 0.82 -0.3
821,464 - Synpcc7942_0826 0.82 -1.3
821,465 - Synpcc7942_0826 0.82 -3.0
821,631 - -0.0

Or see this region's nucleotide sequence