Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemF and Synpcc7942_0675 overlap by 4 nucleotides Synpcc7942_0675 and Synpcc7942_0676 are separated by 95 nucleotides
Synpcc7942_0674: hemF - coproporphyrinogen III oxidase, at 669,347 to 670,300
hemF
Synpcc7942_0675: Synpcc7942_0675 - hypothetical protein, at 670,297 to 670,818
_0675
Synpcc7942_0676: Synpcc7942_0676 - hypothetical protein, at 670,914 to 672,119
_0676
Position (kb) 670
671 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 670.312 kb on + strand at 670.330 kb on + strand at 670.342 kb on - strand at 670.347 kb on - strand at 670.366 kb on + strand, within Synpcc7942_0675 at 670.374 kb on - strand at 670.374 kb on - strand, within Synpcc7942_0675 at 670.379 kb on - strand, within Synpcc7942_0675 at 670.395 kb on + strand, within Synpcc7942_0675 at 670.401 kb on + strand, within Synpcc7942_0675 at 670.401 kb on + strand, within Synpcc7942_0675 at 670.405 kb on + strand, within Synpcc7942_0675 at 670.409 kb on - strand, within Synpcc7942_0675 at 670.435 kb on + strand, within Synpcc7942_0675 at 670.435 kb on + strand, within Synpcc7942_0675 at 670.455 kb on + strand, within Synpcc7942_0675 at 670.455 kb on + strand, within Synpcc7942_0675 at 670.471 kb on + strand, within Synpcc7942_0675 at 670.533 kb on + strand, within Synpcc7942_0675 at 670.579 kb on + strand, within Synpcc7942_0675 at 670.584 kb on + strand, within Synpcc7942_0675 at 670.619 kb on - strand, within Synpcc7942_0675 at 670.668 kb on - strand, within Synpcc7942_0675 at 670.684 kb on - strand, within Synpcc7942_0675 at 670.718 kb on - strand, within Synpcc7942_0675 at 670.728 kb on + strand, within Synpcc7942_0675 at 670.791 kb on - strand at 670.810 kb on + strand at 670.814 kb on + strand at 670.837 kb on + strand at 670.845 kb on - strand at 670.847 kb on + strand at 670.847 kb on + strand at 670.847 kb on + strand at 670.849 kb on + strand at 670.849 kb on + strand at 670.855 kb on - strand at 670.862 kb on + strand at 670.885 kb on + strand at 670.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 670,312 + -1.4 670,330 + -2.1 670,342 - -3.5 670,347 - -3.6 670,366 + Synpcc7942_0675 0.13 -3.1 670,374 - -0.8 670,374 - Synpcc7942_0675 0.15 -3.0 670,379 - Synpcc7942_0675 0.16 +0.5 670,395 + Synpcc7942_0675 0.19 -3.8 670,401 + Synpcc7942_0675 0.20 -0.0 670,401 + Synpcc7942_0675 0.20 -1.8 670,405 + Synpcc7942_0675 0.21 -3.8 670,409 - Synpcc7942_0675 0.21 -1.9 670,435 + Synpcc7942_0675 0.26 -2.1 670,435 + Synpcc7942_0675 0.26 -1.9 670,455 + Synpcc7942_0675 0.30 -1.4 670,455 + Synpcc7942_0675 0.30 -2.1 670,471 + Synpcc7942_0675 0.33 -1.8 670,533 + Synpcc7942_0675 0.45 -2.9 670,579 + Synpcc7942_0675 0.54 -2.7 670,584 + Synpcc7942_0675 0.55 -2.5 670,619 - Synpcc7942_0675 0.62 -2.2 670,668 - Synpcc7942_0675 0.71 -3.4 670,684 - Synpcc7942_0675 0.74 -0.8 670,718 - Synpcc7942_0675 0.81 -2.5 670,728 + Synpcc7942_0675 0.83 -2.8 670,791 - -1.4 670,810 + -1.3 670,814 + -0.9 670,837 + +0.2 670,845 - -1.3 670,847 + -1.9 670,847 + -1.6 670,847 + -0.2 670,849 + -0.8 670,849 + +1.1 670,855 - -2.4 670,862 + -1.0 670,885 + -1.2 670,901 - -0.4
Or see this region's nucleotide sequence