Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trxB and ldpA are separated by 9 nucleotides ldpA and ycf45 overlap by 1 nucleotides
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Synpcc7942_0625: ycf45 - Single-stranded nucleic acid binding R3H, at 616,419 to 618,185
ycf45
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB at 614.966 kb on - strand, within trxB at 615.004 kb on + strand, within trxB at 615.034 kb on - strand, within trxB at 615.044 kb on - strand, within trxB at 615.046 kb on - strand, within trxB at 615.048 kb on + strand, within trxB at 615.048 kb on + strand, within trxB at 615.095 kb on - strand, within trxB at 615.097 kb on + strand, within trxB at 615.130 kb on - strand, within trxB at 615.166 kb on + strand, within trxB at 615.174 kb on - strand, within trxB at 615.174 kb on - strand, within trxB at 615.242 kb on + strand at 615.261 kb on - strand at 615.264 kb on + strand at 615.264 kb on + strand at 615.344 kb on + strand at 615.351 kb on + strand at 615.353 kb on + strand at 615.353 kb on + strand at 615.386 kb on + strand at 615.396 kb on - strand at 615.404 kb on + strand at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand at 616.361 kb on + strand at 616.361 kb on + strand at 616.369 kb on - strand at 616.371 kb on + strand at 616.376 kb on + strand at 616.413 kb on + strand at 616.420 kb on + strand at 616.421 kb on - strand at 616.493 kb on + strand at 616.531 kb on + strand at 616.585 kb on + strand at 616.605 kb on - strand, within ycf45 at 616.621 kb on + strand, within ycf45 at 616.654 kb on + strand, within ycf45 at 616.659 kb on + strand, within ycf45 at 616.720 kb on + strand, within ycf45 at 616.728 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.744 kb on - strand, within ycf45 at 616.755 kb on + strand at 616.788 kb on - strand, within ycf45 at 616.790 kb on + strand, within ycf45 at 616.800 kb on + strand, within ycf45 at 616.808 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.840 kb on - strand, within ycf45 at 616.865 kb on - strand, within ycf45 at 616.867 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.885 kb on + strand, within ycf45 at 616.918 kb on + strand, within ycf45 at 616.928 kb on + strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.936 kb on - strand, within ycf45 at 616.937 kb on + strand, within ycf45 at 617.042 kb on - strand, within ycf45 at 617.067 kb on - strand, within ycf45 at 617.140 kb on + strand, within ycf45 at 617.152 kb on + strand, within ycf45 at 617.154 kb on + strand, within ycf45 at 617.167 kb on + strand, within ycf45 at 617.175 kb on - strand, within ycf45 at 617.300 kb on + strand, within ycf45 at 617.351 kb on + strand, within ycf45 at 617.378 kb on - strand, within ycf45 at 617.383 kb on - strand, within ycf45 at 617.386 kb on - strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.389 kb on + strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.397 kb on - strand, within ycf45 at 617.411 kb on + strand, within ycf45 at 617.414 kb on - strand, within ycf45
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 614,394 + +2.6 614,606 - trxB Synpcc7942_0623 0.46 -0.2 614,610 + trxB Synpcc7942_0623 0.46 +1.5 614,622 + trxB Synpcc7942_0623 0.47 -0.5 614,630 - trxB Synpcc7942_0623 0.48 -0.9 614,630 - trxB Synpcc7942_0623 0.48 +1.0 614,630 - trxB Synpcc7942_0623 0.48 +0.7 614,630 - trxB Synpcc7942_0623 0.48 +1.6 614,780 - trxB Synpcc7942_0623 0.59 +0.9 614,821 + trxB Synpcc7942_0623 0.62 -1.7 614,899 - trxB Synpcc7942_0623 0.67 +0.6 614,966 - trxB Synpcc7942_0623 0.72 -0.0 615,004 + trxB Synpcc7942_0623 0.75 -1.6 615,034 - trxB Synpcc7942_0623 0.77 +0.1 615,044 - trxB Synpcc7942_0623 0.78 +0.5 615,046 - trxB Synpcc7942_0623 0.78 -0.7 615,048 + trxB Synpcc7942_0623 0.78 +0.6 615,048 + trxB Synpcc7942_0623 0.78 +0.2 615,095 - trxB Synpcc7942_0623 0.81 +0.7 615,097 + trxB Synpcc7942_0623 0.82 +0.0 615,130 - trxB Synpcc7942_0623 0.84 -1.0 615,166 + trxB Synpcc7942_0623 0.87 +2.0 615,174 - trxB Synpcc7942_0623 0.87 +0.7 615,174 - trxB Synpcc7942_0623 0.87 -0.3 615,242 + +1.6 615,261 - -1.2 615,264 + +0.2 615,264 + -1.1 615,344 + +0.5 615,351 + +1.7 615,353 + +0.4 615,353 + +0.6 615,386 + -0.7 615,396 - -0.5 615,404 + -1.8 615,467 + ldpA Synpcc7942_0624 0.10 -0.5 615,467 + ldpA Synpcc7942_0624 0.10 -1.2 615,474 - ldpA Synpcc7942_0624 0.11 -0.1 615,475 - ldpA Synpcc7942_0624 0.11 -1.3 615,519 + ldpA Synpcc7942_0624 0.15 -1.3 615,593 + ldpA Synpcc7942_0624 0.22 -1.4 615,593 + ldpA Synpcc7942_0624 0.22 -2.7 615,658 - ldpA Synpcc7942_0624 0.28 -2.2 615,662 + ldpA Synpcc7942_0624 0.28 -0.2 615,670 - ldpA Synpcc7942_0624 0.29 -1.1 615,670 - ldpA Synpcc7942_0624 0.29 -2.7 615,670 - ldpA Synpcc7942_0624 0.29 -1.5 615,751 + ldpA Synpcc7942_0624 0.37 -1.5 615,786 + ldpA Synpcc7942_0624 0.40 -1.0 615,902 + ldpA Synpcc7942_0624 0.51 -1.1 615,975 + ldpA Synpcc7942_0624 0.58 -2.3 615,983 - ldpA Synpcc7942_0624 0.59 -0.4 616,075 - ldpA Synpcc7942_0624 0.67 -3.2 616,089 - ldpA Synpcc7942_0624 0.69 -2.0 616,093 + ldpA Synpcc7942_0624 0.69 -1.9 616,195 + ldpA Synpcc7942_0624 0.79 -1.8 616,321 + -1.6 616,361 + +0.5 616,361 + +0.2 616,369 - -0.3 616,371 + +0.7 616,376 + +0.3 616,413 + -1.6 616,420 + -1.0 616,421 - +0.4 616,493 + -1.0 616,531 + -0.8 616,585 + -0.3 616,605 - ycf45 Synpcc7942_0625 0.11 +0.2 616,621 + ycf45 Synpcc7942_0625 0.11 +0.0 616,654 + ycf45 Synpcc7942_0625 0.13 +1.0 616,659 + ycf45 Synpcc7942_0625 0.14 -0.2 616,720 + ycf45 Synpcc7942_0625 0.17 +0.6 616,728 - ycf45 Synpcc7942_0625 0.17 -2.0 616,744 - ycf45 Synpcc7942_0625 0.18 +0.9 616,744 - ycf45 Synpcc7942_0625 0.18 -0.7 616,755 + -0.3 616,788 - ycf45 Synpcc7942_0625 0.21 -0.8 616,790 + ycf45 Synpcc7942_0625 0.21 +0.4 616,800 + ycf45 Synpcc7942_0625 0.22 +0.3 616,808 - ycf45 Synpcc7942_0625 0.22 -0.8 616,840 - ycf45 Synpcc7942_0625 0.24 -0.3 616,840 - ycf45 Synpcc7942_0625 0.24 +0.1 616,865 - ycf45 Synpcc7942_0625 0.25 +1.5 616,867 + ycf45 Synpcc7942_0625 0.25 +0.5 616,885 + ycf45 Synpcc7942_0625 0.26 +0.1 616,885 + ycf45 Synpcc7942_0625 0.26 -0.3 616,918 + ycf45 Synpcc7942_0625 0.28 +0.5 616,928 + ycf45 Synpcc7942_0625 0.29 +0.1 616,936 - ycf45 Synpcc7942_0625 0.29 -0.6 616,936 - ycf45 Synpcc7942_0625 0.29 +0.1 616,937 + ycf45 Synpcc7942_0625 0.29 -1.4 617,042 - ycf45 Synpcc7942_0625 0.35 -1.5 617,067 - ycf45 Synpcc7942_0625 0.37 +0.2 617,140 + ycf45 Synpcc7942_0625 0.41 +1.0 617,152 + ycf45 Synpcc7942_0625 0.41 +0.6 617,154 + ycf45 Synpcc7942_0625 0.42 -1.1 617,167 + ycf45 Synpcc7942_0625 0.42 -0.6 617,175 - ycf45 Synpcc7942_0625 0.43 +0.7 617,300 + ycf45 Synpcc7942_0625 0.50 +1.3 617,351 + ycf45 Synpcc7942_0625 0.53 +0.7 617,378 - ycf45 Synpcc7942_0625 0.54 +0.6 617,383 - ycf45 Synpcc7942_0625 0.55 -0.3 617,386 - ycf45 Synpcc7942_0625 0.55 +1.0 617,389 + ycf45 Synpcc7942_0625 0.55 -0.4 617,389 + ycf45 Synpcc7942_0625 0.55 +0.9 617,397 - ycf45 Synpcc7942_0625 0.55 -0.0 617,397 - ycf45 Synpcc7942_0625 0.55 -0.3 617,411 + ycf45 Synpcc7942_0625 0.56 -0.1 617,414 - ycf45 Synpcc7942_0625 0.56 -0.3
Or see this region's nucleotide sequence