Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltA and sixA are separated by 134 nucleotides sixA and Synpcc7942_0614 are separated by 3 nucleotides Synpcc7942_0614 and Synpcc7942_0615 are separated by 160 nucleotides Synpcc7942_0615 and hrcA are separated by 57 nucleotides
Synpcc7942_0612: gltA - methylcitrate synthase, at 602,209 to 603,369
gltA
Synpcc7942_0613: sixA - phosphohistidine phosphatase, SixA, at 603,504 to 603,992
sixA
Synpcc7942_0614: Synpcc7942_0614 - hypothetical protein, at 603,996 to 605,675
_0614
Synpcc7942_0615: Synpcc7942_0615 - Rhodanese-like, at 605,836 to 606,180
_0615
Synpcc7942_0616: hrcA - heat-inducible transcription repressor, at 606,238 to 607,299
hrcA
Position (kb) 603
604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.455 kb on - strand at 603.490 kb on + strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.510 kb on - strand at 603.529 kb on + strand at 603.569 kb on - strand, within sixA at 603.583 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.603 kb on - strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.615 kb on + strand, within sixA at 603.618 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.623 kb on - strand, within sixA at 603.641 kb on + strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.661 kb on - strand, within sixA at 603.687 kb on + strand, within sixA at 603.687 kb on + strand, within sixA at 603.732 kb on + strand, within sixA at 603.780 kb on + strand, within sixA at 603.825 kb on + strand, within sixA at 603.828 kb on - strand, within sixA at 603.838 kb on + strand, within sixA at 603.845 kb on - strand, within sixA at 603.850 kb on + strand, within sixA at 603.905 kb on + strand, within sixA at 603.913 kb on + strand, within sixA at 603.994 kb on + strand at 604.037 kb on - strand at 604.052 kb on - strand at 604.544 kb on - strand, within Synpcc7942_0614 at 604.686 kb on + strand, within Synpcc7942_0614 at 605.126 kb on + strand at 605.140 kb on + strand, within Synpcc7942_0614 at 605.720 kb on - strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.789 kb on - strand at 605.806 kb on - strand at 605.811 kb on + strand at 605.819 kb on - strand at 605.832 kb on + strand at 605.840 kb on - strand at 605.840 kb on - strand at 605.860 kb on + strand at 605.867 kb on + strand at 605.875 kb on - strand, within Synpcc7942_0615 at 605.885 kb on - strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.912 kb on + strand, within Synpcc7942_0615 at 605.960 kb on + strand, within Synpcc7942_0615 at 605.974 kb on + strand, within Synpcc7942_0615 at 605.982 kb on - strand, within Synpcc7942_0615 at 605.993 kb on + strand, within Synpcc7942_0615 at 606.016 kb on + strand, within Synpcc7942_0615 at 606.024 kb on - strand, within Synpcc7942_0615 at 606.078 kb on - strand, within Synpcc7942_0615 at 606.100 kb on + strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.109 kb on - strand, within Synpcc7942_0615 at 606.112 kb on + strand, within Synpcc7942_0615 at 606.113 kb on + strand, within Synpcc7942_0615 at 606.166 kb on + strand at 606.173 kb on - strand at 606.174 kb on + strand at 606.209 kb on - strand at 606.213 kb on - strand at 606.232 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.326 kb on - strand at 606.331 kb on - strand at 606.331 kb on - strand at 606.342 kb on + strand at 606.357 kb on + strand, within hrcA at 606.382 kb on + strand, within hrcA at 606.383 kb on - strand, within hrcA at 606.390 kb on - strand, within hrcA at 606.399 kb on - strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.454 kb on - strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.491 kb on - strand, within hrcA at 606.497 kb on - strand, within hrcA at 606.502 kb on + strand, within hrcA at 606.510 kb on - strand, within hrcA at 606.517 kb on + strand, within hrcA at 606.530 kb on + strand, within hrcA at 606.538 kb on - strand, within hrcA at 606.563 kb on + strand, within hrcA at 606.565 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.583 kb on + strand, within hrcA at 606.591 kb on - strand, within hrcA at 606.669 kb on - strand, within hrcA
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 603,455 - +1.2 603,490 + -0.3 603,510 - +0.5 603,510 - +0.6 603,510 - -0.4 603,510 - +0.6 603,529 + -1.8 603,569 - sixA Synpcc7942_0613 0.13 -0.8 603,583 - sixA Synpcc7942_0613 0.16 -0.1 603,603 - sixA Synpcc7942_0613 0.20 +0.2 603,603 - sixA Synpcc7942_0613 0.20 -0.4 603,615 + sixA Synpcc7942_0613 0.23 +0.5 603,615 + sixA Synpcc7942_0613 0.23 +2.0 603,615 + sixA Synpcc7942_0613 0.23 +0.1 603,618 - sixA Synpcc7942_0613 0.23 -1.0 603,623 - sixA Synpcc7942_0613 0.24 -1.0 603,623 - sixA Synpcc7942_0613 0.24 -0.8 603,641 + sixA Synpcc7942_0613 0.28 +0.9 603,661 - sixA Synpcc7942_0613 0.32 -0.3 603,661 - sixA Synpcc7942_0613 0.32 +0.2 603,661 - sixA Synpcc7942_0613 0.32 -0.2 603,687 + sixA Synpcc7942_0613 0.37 +0.6 603,687 + sixA Synpcc7942_0613 0.37 +1.0 603,732 + sixA Synpcc7942_0613 0.47 +0.3 603,780 + sixA Synpcc7942_0613 0.56 +0.0 603,825 + sixA Synpcc7942_0613 0.66 -2.5 603,828 - sixA Synpcc7942_0613 0.66 -0.5 603,838 + sixA Synpcc7942_0613 0.68 -0.1 603,845 - sixA Synpcc7942_0613 0.70 +0.7 603,850 + sixA Synpcc7942_0613 0.71 +0.5 603,905 + sixA Synpcc7942_0613 0.82 -0.1 603,913 + sixA Synpcc7942_0613 0.84 -0.5 603,994 + +0.5 604,037 - -0.3 604,052 - +0.5 604,544 - Synpcc7942_0614 0.33 -1.1 604,686 + Synpcc7942_0614 0.41 -0.5 605,126 + +0.5 605,140 + Synpcc7942_0614 0.68 -0.1 605,720 - +0.6 605,781 + -0.3 605,781 + -0.3 605,781 + -0.5 605,781 + +0.2 605,789 - +0.1 605,806 - +0.7 605,811 + +0.3 605,819 - +1.3 605,832 + +0.4 605,840 - -0.7 605,840 - +1.3 605,860 + -1.0 605,867 + -0.9 605,875 - Synpcc7942_0615 0.11 +0.8 605,885 - Synpcc7942_0615 0.14 -0.5 605,887 + Synpcc7942_0615 0.15 -0.5 605,887 + Synpcc7942_0615 0.15 -1.0 605,887 + Synpcc7942_0615 0.15 -0.1 605,887 + Synpcc7942_0615 0.15 -0.6 605,912 + Synpcc7942_0615 0.22 +1.0 605,960 + Synpcc7942_0615 0.36 -0.2 605,974 + Synpcc7942_0615 0.40 +0.8 605,982 - Synpcc7942_0615 0.42 -0.2 605,993 + Synpcc7942_0615 0.46 -0.6 606,016 + Synpcc7942_0615 0.52 +0.0 606,024 - Synpcc7942_0615 0.54 +1.2 606,078 - Synpcc7942_0615 0.70 +0.3 606,100 + Synpcc7942_0615 0.77 -0.4 606,102 - Synpcc7942_0615 0.77 +0.3 606,102 - Synpcc7942_0615 0.77 -0.1 606,102 - Synpcc7942_0615 0.77 -0.6 606,109 - Synpcc7942_0615 0.79 -1.2 606,112 + Synpcc7942_0615 0.80 -0.8 606,113 + Synpcc7942_0615 0.80 +0.1 606,166 + -0.2 606,173 - -0.0 606,174 + -1.5 606,209 - +0.5 606,213 - -0.0 606,232 + -1.9 606,323 + -0.4 606,323 + +0.5 606,323 + +0.7 606,323 + +0.6 606,326 - +0.2 606,331 - -0.5 606,331 - +0.4 606,342 + +0.5 606,357 + hrcA Synpcc7942_0616 0.11 +0.2 606,382 + hrcA Synpcc7942_0616 0.14 -0.1 606,383 - hrcA Synpcc7942_0616 0.14 +0.3 606,390 - hrcA Synpcc7942_0616 0.14 -1.9 606,399 - hrcA Synpcc7942_0616 0.15 +0.2 606,406 + hrcA Synpcc7942_0616 0.16 -0.8 606,406 + hrcA Synpcc7942_0616 0.16 -0.2 606,454 - hrcA Synpcc7942_0616 0.20 -0.5 606,465 + hrcA Synpcc7942_0616 0.21 -0.3 606,465 + hrcA Synpcc7942_0616 0.21 +0.8 606,491 - hrcA Synpcc7942_0616 0.24 -1.7 606,497 - hrcA Synpcc7942_0616 0.24 -0.6 606,502 + hrcA Synpcc7942_0616 0.25 -0.3 606,510 - hrcA Synpcc7942_0616 0.26 -2.1 606,517 + hrcA Synpcc7942_0616 0.26 -0.7 606,530 + hrcA Synpcc7942_0616 0.27 +1.2 606,538 - hrcA Synpcc7942_0616 0.28 -0.1 606,563 + hrcA Synpcc7942_0616 0.31 +1.0 606,565 + hrcA Synpcc7942_0616 0.31 -0.9 606,573 + hrcA Synpcc7942_0616 0.32 +0.7 606,573 + hrcA Synpcc7942_0616 0.32 -1.8 606,583 + hrcA Synpcc7942_0616 0.32 -0.1 606,591 - hrcA Synpcc7942_0616 0.33 +0.4 606,669 - hrcA Synpcc7942_0616 0.41 +0.7
Or see this region's nucleotide sequence