Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt codA and rpoD4 are separated by 30 nucleotides rpoD4 and dnaE are separated by 224 nucleotides
Synpcc7942_0568: codA - cytosine deaminase, at 549,371 to 550,687
codA
Synpcc7942_0569: rpoD4 - DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like, at 550,718 to 551,653
rpoD4
Synpcc7942_0570: dnaE - DNA polymerase III subunit alpha, at 551,878 to 553,221
dnaE
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.731 kb on + strand, within codA at 549.742 kb on + strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.750 kb on - strand, within codA at 549.828 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.843 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.867 kb on + strand, within codA at 549.875 kb on - strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.886 kb on + strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.894 kb on - strand, within codA at 549.900 kb on + strand, within codA at 549.908 kb on - strand, within codA at 549.935 kb on + strand, within codA at 549.945 kb on - strand, within codA at 549.948 kb on + strand, within codA at 549.950 kb on + strand, within codA at 549.973 kb on + strand, within codA at 549.975 kb on - strand, within codA at 550.080 kb on + strand, within codA at 550.088 kb on - strand, within codA at 550.093 kb on - strand, within codA at 550.147 kb on + strand, within codA at 550.155 kb on - strand, within codA at 550.155 kb on - strand, within codA at 550.156 kb on + strand, within codA at 550.165 kb on - strand, within codA at 550.226 kb on + strand, within codA at 550.226 kb on + strand, within codA at 550.234 kb on - strand at 550.234 kb on - strand, within codA at 550.263 kb on - strand, within codA at 550.270 kb on + strand, within codA at 550.278 kb on - strand, within codA at 550.283 kb on - strand, within codA at 550.294 kb on - strand, within codA at 550.298 kb on + strand, within codA at 550.311 kb on - strand, within codA at 550.311 kb on - strand, within codA at 550.312 kb on - strand, within codA at 550.370 kb on + strand, within codA at 550.391 kb on + strand, within codA at 550.399 kb on + strand, within codA at 550.407 kb on - strand, within codA at 550.414 kb on + strand, within codA at 550.426 kb on - strand, within codA at 550.474 kb on - strand, within codA at 550.484 kb on + strand, within codA at 550.506 kb on + strand, within codA at 550.514 kb on - strand, within codA at 550.519 kb on - strand, within codA at 550.599 kb on - strand at 550.604 kb on - strand at 550.610 kb on + strand at 550.621 kb on - strand at 550.623 kb on + strand at 550.655 kb on - strand at 550.673 kb on - strand at 550.692 kb on + strand at 550.692 kb on + strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.699 kb on - strand at 550.719 kb on + strand at 550.719 kb on - strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.726 kb on + strand at 550.739 kb on - strand at 550.741 kb on + strand at 550.741 kb on + strand at 550.921 kb on + strand, within rpoD4 at 550.953 kb on - strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.963 kb on + strand, within rpoD4 at 550.970 kb on + strand at 550.971 kb on - strand at 550.971 kb on - strand, within rpoD4 at 551.031 kb on - strand, within rpoD4 at 551.042 kb on + strand, within rpoD4 at 551.077 kb on - strand, within rpoD4 at 551.137 kb on - strand, within rpoD4 at 551.293 kb on - strand at 551.364 kb on - strand, within rpoD4 at 551.364 kb on - strand, within rpoD4 at 551.520 kb on - strand, within rpoD4 at 551.538 kb on - strand, within rpoD4 at 551.555 kb on - strand, within rpoD4 at 551.629 kb on + strand at 551.630 kb on - strand at 551.643 kb on + strand at 551.667 kb on + strand at 551.677 kb on + strand at 551.679 kb on + strand at 551.679 kb on + strand at 551.870 kb on - strand at 551.872 kb on - strand at 551.878 kb on - strand at 551.883 kb on - strand at 551.883 kb on - strand at 551.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 549,731 + codA Synpcc7942_0568 0.27 +0.7 549,742 + codA Synpcc7942_0568 0.28 +0.2 549,750 - codA Synpcc7942_0568 0.29 +1.3 549,750 - codA Synpcc7942_0568 0.29 +0.9 549,750 - codA Synpcc7942_0568 0.29 -0.1 549,828 + codA Synpcc7942_0568 0.35 -0.3 549,843 + codA Synpcc7942_0568 0.36 +0.5 549,843 + codA Synpcc7942_0568 0.36 -0.7 549,843 + codA Synpcc7942_0568 0.36 -1.3 549,867 + codA Synpcc7942_0568 0.38 +0.1 549,867 + codA Synpcc7942_0568 0.38 +0.5 549,875 - codA Synpcc7942_0568 0.38 +0.9 549,886 + codA Synpcc7942_0568 0.39 +1.2 549,886 + codA Synpcc7942_0568 0.39 +1.3 549,886 + codA Synpcc7942_0568 0.39 -0.3 549,886 + codA Synpcc7942_0568 0.39 +0.4 549,894 - codA Synpcc7942_0568 0.40 +1.1 549,894 - codA Synpcc7942_0568 0.40 +0.2 549,894 - codA Synpcc7942_0568 0.40 +0.0 549,900 + codA Synpcc7942_0568 0.40 -0.6 549,908 - codA Synpcc7942_0568 0.41 -0.2 549,935 + codA Synpcc7942_0568 0.43 +0.3 549,945 - codA Synpcc7942_0568 0.44 +0.5 549,948 + codA Synpcc7942_0568 0.44 -0.6 549,950 + codA Synpcc7942_0568 0.44 +0.8 549,973 + codA Synpcc7942_0568 0.46 -0.9 549,975 - codA Synpcc7942_0568 0.46 -0.1 550,080 + codA Synpcc7942_0568 0.54 +0.2 550,088 - codA Synpcc7942_0568 0.54 +0.3 550,093 - codA Synpcc7942_0568 0.55 +0.3 550,147 + codA Synpcc7942_0568 0.59 +0.9 550,155 - codA Synpcc7942_0568 0.60 +0.1 550,155 - codA Synpcc7942_0568 0.60 -0.9 550,156 + codA Synpcc7942_0568 0.60 -1.5 550,165 - codA Synpcc7942_0568 0.60 -0.1 550,226 + codA Synpcc7942_0568 0.65 +0.3 550,226 + codA Synpcc7942_0568 0.65 -0.5 550,234 - -0.3 550,234 - codA Synpcc7942_0568 0.66 -0.1 550,263 - codA Synpcc7942_0568 0.68 +0.4 550,270 + codA Synpcc7942_0568 0.68 +0.1 550,278 - codA Synpcc7942_0568 0.69 +0.7 550,283 - codA Synpcc7942_0568 0.69 -0.4 550,294 - codA Synpcc7942_0568 0.70 -1.8 550,298 + codA Synpcc7942_0568 0.70 +0.2 550,311 - codA Synpcc7942_0568 0.71 +0.1 550,311 - codA Synpcc7942_0568 0.71 -0.4 550,312 - codA Synpcc7942_0568 0.71 +0.4 550,370 + codA Synpcc7942_0568 0.76 +0.6 550,391 + codA Synpcc7942_0568 0.77 +0.2 550,399 + codA Synpcc7942_0568 0.78 +0.1 550,407 - codA Synpcc7942_0568 0.79 +0.7 550,414 + codA Synpcc7942_0568 0.79 +0.3 550,426 - codA Synpcc7942_0568 0.80 -0.9 550,474 - codA Synpcc7942_0568 0.84 +0.1 550,484 + codA Synpcc7942_0568 0.85 +0.0 550,506 + codA Synpcc7942_0568 0.86 +0.5 550,514 - codA Synpcc7942_0568 0.87 +0.0 550,519 - codA Synpcc7942_0568 0.87 -0.1 550,599 - -0.2 550,604 - -0.4 550,610 + -0.8 550,621 - -0.6 550,623 + -0.5 550,655 - +1.8 550,673 - -1.1 550,692 + -0.1 550,692 + -0.1 550,699 - +0.5 550,699 - +0.3 550,699 - +0.1 550,719 + -0.2 550,719 - -0.6 550,726 + -1.4 550,726 + +0.3 550,726 + +0.8 550,739 - +0.4 550,741 + -0.1 550,741 + -0.8 550,921 + rpoD4 Synpcc7942_0569 0.22 -2.5 550,953 - rpoD4 Synpcc7942_0569 0.25 -2.3 550,963 + rpoD4 Synpcc7942_0569 0.26 -1.6 550,963 + rpoD4 Synpcc7942_0569 0.26 -1.5 550,970 + +0.3 550,971 - +0.5 550,971 - rpoD4 Synpcc7942_0569 0.27 -1.5 551,031 - rpoD4 Synpcc7942_0569 0.33 -1.1 551,042 + rpoD4 Synpcc7942_0569 0.35 -0.3 551,077 - rpoD4 Synpcc7942_0569 0.38 +0.3 551,137 - rpoD4 Synpcc7942_0569 0.45 -1.1 551,293 - +0.1 551,364 - rpoD4 Synpcc7942_0569 0.69 -0.1 551,364 - rpoD4 Synpcc7942_0569 0.69 -0.3 551,520 - rpoD4 Synpcc7942_0569 0.86 -1.0 551,538 - rpoD4 Synpcc7942_0569 0.88 -1.3 551,555 - rpoD4 Synpcc7942_0569 0.89 -0.7 551,629 + -0.0 551,630 - -0.1 551,643 + -0.9 551,667 + -1.6 551,677 + -1.1 551,679 + -0.7 551,679 + +0.7 551,870 - +0.2 551,872 - -0.4 551,878 - -0.3 551,883 - -2.5 551,883 - +0.9 551,903 - -0.4
Or see this region's nucleotide sequence