Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0467

Experiment: BG11 with Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0466 and Synpcc7942_0467 overlap by 84 nucleotidesSynpcc7942_0467 and secG overlap by 32 nucleotidessecG and yibO are separated by 20 nucleotides Synpcc7942_0466: Synpcc7942_0466 - Cellulose synthase (UDP-forming), at 451,838 to 454,087 _0466 Synpcc7942_0467: Synpcc7942_0467 - Peptidase, metallopeptidase, at 454,004 to 454,837 _0467 Synpcc7942_0468: secG - preprotein translocase subunit SecG, at 454,806 to 455,045 secG Synpcc7942_0469: yibO - phosphoglyceromutase, at 455,066 to 456,664 yibO Position (kb) 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 453.068 kb on + strand, within Synpcc7942_0466at 453.068 kb on + strand, within Synpcc7942_0466at 453.068 kb on + strand, within Synpcc7942_0466at 453.068 kb on + strand, within Synpcc7942_0466at 453.068 kb on + strand, within Synpcc7942_0466at 453.076 kb on - strand, within Synpcc7942_0466at 453.088 kb on + strand, within Synpcc7942_0466at 453.088 kb on + strand, within Synpcc7942_0466at 453.096 kb on + strand, within Synpcc7942_0466at 453.102 kb on - strand, within Synpcc7942_0466at 453.120 kb on - strand, within Synpcc7942_0466at 453.149 kb on + strand, within Synpcc7942_0466at 453.159 kb on + strand, within Synpcc7942_0466at 453.210 kb on - strand, within Synpcc7942_0466at 453.258 kb on - strand, within Synpcc7942_0466at 453.258 kb on - strand, within Synpcc7942_0466at 453.258 kb on - strand, within Synpcc7942_0466at 453.275 kb on + strand, within Synpcc7942_0466at 453.281 kb on - strand, within Synpcc7942_0466at 453.290 kb on + strand, within Synpcc7942_0466at 453.290 kb on + strand, within Synpcc7942_0466at 453.323 kb on + strand, within Synpcc7942_0466at 453.329 kb on - strand, within Synpcc7942_0466at 453.329 kb on - strand, within Synpcc7942_0466at 453.331 kb on - strand, within Synpcc7942_0466at 453.331 kb on - strand, within Synpcc7942_0466at 453.350 kb on + strand, within Synpcc7942_0466at 453.353 kb on - strand, within Synpcc7942_0466at 453.355 kb on + strand, within Synpcc7942_0466at 453.358 kb on - strand, within Synpcc7942_0466at 453.370 kb on + strand, within Synpcc7942_0466at 453.376 kb on - strand, within Synpcc7942_0466at 453.380 kb on - strand, within Synpcc7942_0466at 453.391 kb on + strand, within Synpcc7942_0466at 453.392 kb on + strand, within Synpcc7942_0466at 453.397 kb on + strand, within Synpcc7942_0466at 453.399 kb on - strand, within Synpcc7942_0466at 453.423 kb on + strand, within Synpcc7942_0466at 453.432 kb on - strand, within Synpcc7942_0466at 453.432 kb on - strand, within Synpcc7942_0466at 453.464 kb on + strand, within Synpcc7942_0466at 453.477 kb on - strand, within Synpcc7942_0466at 453.505 kb on + strand, within Synpcc7942_0466at 453.507 kb on - strand, within Synpcc7942_0466at 453.510 kb on + strandat 453.518 kb on - strand, within Synpcc7942_0466at 453.534 kb on + strand, within Synpcc7942_0466at 453.562 kb on + strand, within Synpcc7942_0466at 453.565 kb on - strand, within Synpcc7942_0466at 453.582 kb on + strand, within Synpcc7942_0466at 453.582 kb on + strand, within Synpcc7942_0466at 453.600 kb on - strand, within Synpcc7942_0466at 453.602 kb on + strand, within Synpcc7942_0466at 453.610 kb on - strand, within Synpcc7942_0466at 453.610 kb on - strand, within Synpcc7942_0466at 453.652 kb on + strand, within Synpcc7942_0466at 453.660 kb on - strand, within Synpcc7942_0466at 453.671 kb on + strand, within Synpcc7942_0466at 453.700 kb on + strand, within Synpcc7942_0466at 453.724 kb on - strand, within Synpcc7942_0466at 453.738 kb on + strand, within Synpcc7942_0466at 453.782 kb on - strand, within Synpcc7942_0466at 453.783 kb on - strand, within Synpcc7942_0466at 453.795 kb on + strandat 453.798 kb on + strand, within Synpcc7942_0466at 453.864 kb on + strandat 453.878 kb on - strandat 453.993 kb on - strandat 454.213 kb on - strand, within Synpcc7942_0467at 454.245 kb on - strand, within Synpcc7942_0467at 454.285 kb on - strand, within Synpcc7942_0467at 454.290 kb on - strand, within Synpcc7942_0467at 454.300 kb on - strand, within Synpcc7942_0467at 454.310 kb on - strand, within Synpcc7942_0467at 454.625 kb on - strand, within Synpcc7942_0467at 454.680 kb on + strand, within Synpcc7942_0467at 454.724 kb on - strand, within Synpcc7942_0467at 454.760 kb on + strandat 454.760 kb on + strandat 454.768 kb on - strandat 454.803 kb on + strandat 454.806 kb on - strandat 454.806 kb on - strandat 454.811 kb on - strandat 454.828 kb on - strandat 454.837 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml
remove
453,068 + Synpcc7942_0466 0.55 +0.3
453,068 + Synpcc7942_0466 0.55 -1.0
453,068 + Synpcc7942_0466 0.55 +0.5
453,068 + Synpcc7942_0466 0.55 +0.9
453,068 + Synpcc7942_0466 0.55 -1.6
453,076 - Synpcc7942_0466 0.55 +0.4
453,088 + Synpcc7942_0466 0.56 +0.2
453,088 + Synpcc7942_0466 0.56 -0.1
453,096 + Synpcc7942_0466 0.56 -0.2
453,102 - Synpcc7942_0466 0.56 -0.2
453,120 - Synpcc7942_0466 0.57 +0.0
453,149 + Synpcc7942_0466 0.58 +0.9
453,159 + Synpcc7942_0466 0.59 -1.7
453,210 - Synpcc7942_0466 0.61 +0.5
453,258 - Synpcc7942_0466 0.63 -1.0
453,258 - Synpcc7942_0466 0.63 +0.4
453,258 - Synpcc7942_0466 0.63 +0.8
453,275 + Synpcc7942_0466 0.64 +0.9
453,281 - Synpcc7942_0466 0.64 +0.5
453,290 + Synpcc7942_0466 0.65 -0.3
453,290 + Synpcc7942_0466 0.65 -0.0
453,323 + Synpcc7942_0466 0.66 +0.7
453,329 - Synpcc7942_0466 0.66 +1.0
453,329 - Synpcc7942_0466 0.66 +0.2
453,331 - Synpcc7942_0466 0.66 -1.6
453,331 - Synpcc7942_0466 0.66 -0.9
453,350 + Synpcc7942_0466 0.67 -1.3
453,353 - Synpcc7942_0466 0.67 +0.0
453,355 + Synpcc7942_0466 0.67 -0.0
453,358 - Synpcc7942_0466 0.68 -1.5
453,370 + Synpcc7942_0466 0.68 -0.4
453,376 - Synpcc7942_0466 0.68 -0.7
453,380 - Synpcc7942_0466 0.69 +0.5
453,391 + Synpcc7942_0466 0.69 +0.2
453,392 + Synpcc7942_0466 0.69 -2.0
453,397 + Synpcc7942_0466 0.69 -1.1
453,399 - Synpcc7942_0466 0.69 +0.8
453,423 + Synpcc7942_0466 0.70 +0.7
453,432 - Synpcc7942_0466 0.71 -0.1
453,432 - Synpcc7942_0466 0.71 -0.8
453,464 + Synpcc7942_0466 0.72 +0.1
453,477 - Synpcc7942_0466 0.73 -0.1
453,505 + Synpcc7942_0466 0.74 -0.2
453,507 - Synpcc7942_0466 0.74 +0.6
453,510 + -1.1
453,518 - Synpcc7942_0466 0.75 +0.1
453,534 + Synpcc7942_0466 0.75 -0.6
453,562 + Synpcc7942_0466 0.77 +0.2
453,565 - Synpcc7942_0466 0.77 -1.4
453,582 + Synpcc7942_0466 0.78 +0.2
453,582 + Synpcc7942_0466 0.78 +0.6
453,600 - Synpcc7942_0466 0.78 -0.2
453,602 + Synpcc7942_0466 0.78 +0.1
453,610 - Synpcc7942_0466 0.79 -0.3
453,610 - Synpcc7942_0466 0.79 +0.3
453,652 + Synpcc7942_0466 0.81 -0.3
453,660 - Synpcc7942_0466 0.81 +0.3
453,671 + Synpcc7942_0466 0.81 -1.0
453,700 + Synpcc7942_0466 0.83 +1.1
453,724 - Synpcc7942_0466 0.84 +0.9
453,738 + Synpcc7942_0466 0.84 +0.3
453,782 - Synpcc7942_0466 0.86 -0.5
453,783 - Synpcc7942_0466 0.86 +0.3
453,795 + +1.8
453,798 + Synpcc7942_0466 0.87 -1.1
453,864 + -0.4
453,878 - +0.2
453,993 - -0.1
454,213 - Synpcc7942_0467 0.25 -2.3
454,245 - Synpcc7942_0467 0.29 -0.5
454,285 - Synpcc7942_0467 0.34 -2.4
454,290 - Synpcc7942_0467 0.34 -0.7
454,300 - Synpcc7942_0467 0.35 -0.5
454,310 - Synpcc7942_0467 0.37 -2.4
454,625 - Synpcc7942_0467 0.74 -1.6
454,680 + Synpcc7942_0467 0.81 -1.6
454,724 - Synpcc7942_0467 0.86 -3.2
454,760 + -0.1
454,760 + +0.1
454,768 - +0.1
454,803 + -0.2
454,806 - +0.1
454,806 - +0.7
454,811 - +1.0
454,828 - -0.1
454,837 - -1.1

Or see this region's nucleotide sequence