Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0415 and Synpcc7942_0416 are separated by 243 nucleotides Synpcc7942_0416 and Synpcc7942_0417 are separated by 78 nucleotides Synpcc7942_0417 and Synpcc7942_0418 are separated by 134 nucleotides Synpcc7942_0418 and bioB are separated by 96 nucleotides
Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145
_0415
Synpcc7942_0416: Synpcc7942_0416 - hypothetical protein, at 406,389 to 406,772
_0416
Synpcc7942_0417: Synpcc7942_0417 - ATPase, at 406,851 to 408,359
_0417
Synpcc7942_0418: Synpcc7942_0418 - hypothetical protein, at 408,494 to 408,844
_0418
Synpcc7942_0419: bioB - biotin synthase, at 408,941 to 409,903
bioB
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.904 kb on + strand, within Synpcc7942_0415 at 405.907 kb on - strand, within Synpcc7942_0415 at 405.918 kb on + strand, within Synpcc7942_0415 at 405.939 kb on + strand, within Synpcc7942_0415 at 405.955 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand at 405.958 kb on + strand, within Synpcc7942_0415 at 406.008 kb on - strand, within Synpcc7942_0415 at 406.051 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.062 kb on + strand at 406.090 kb on + strand at 406.107 kb on - strand at 406.107 kb on - strand at 406.117 kb on - strand at 406.131 kb on + strand at 406.139 kb on - strand at 406.153 kb on + strand at 406.155 kb on + strand at 406.155 kb on + strand at 406.161 kb on - strand at 406.163 kb on - strand at 406.163 kb on - strand at 406.165 kb on + strand at 406.172 kb on + strand at 406.173 kb on - strand at 406.173 kb on - strand at 406.180 kb on - strand at 406.222 kb on - strand at 406.245 kb on + strand at 406.263 kb on - strand at 406.484 kb on + strand, within Synpcc7942_0416 at 406.500 kb on + strand, within Synpcc7942_0416 at 406.533 kb on + strand at 406.547 kb on + strand at 406.555 kb on - strand, within Synpcc7942_0416 at 406.555 kb on - strand, within Synpcc7942_0416 at 406.562 kb on + strand, within Synpcc7942_0416 at 406.583 kb on + strand, within Synpcc7942_0416 at 406.659 kb on + strand, within Synpcc7942_0416 at 406.667 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.690 kb on - strand, within Synpcc7942_0416 at 406.716 kb on + strand, within Synpcc7942_0416 at 406.724 kb on - strand, within Synpcc7942_0416 at 406.773 kb on + strand at 406.798 kb on + strand at 406.808 kb on - strand at 406.868 kb on - strand at 406.934 kb on + strand at 406.987 kb on - strand at 407.036 kb on + strand, within Synpcc7942_0417 at 407.039 kb on - strand, within Synpcc7942_0417 at 407.041 kb on + strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.044 kb on - strand, within Synpcc7942_0417 at 407.049 kb on - strand, within Synpcc7942_0417 at 407.088 kb on - strand, within Synpcc7942_0417 at 407.132 kb on + strand, within Synpcc7942_0417 at 407.174 kb on + strand, within Synpcc7942_0417 at 407.184 kb on + strand, within Synpcc7942_0417 at 407.197 kb on - strand at 407.204 kb on + strand, within Synpcc7942_0417 at 407.283 kb on + strand, within Synpcc7942_0417 at 407.350 kb on + strand, within Synpcc7942_0417 at 407.376 kb on + strand, within Synpcc7942_0417 at 407.449 kb on + strand, within Synpcc7942_0417 at 407.556 kb on + strand at 407.612 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.624 kb on + strand, within Synpcc7942_0417 at 407.657 kb on - strand, within Synpcc7942_0417 at 407.732 kb on + strand at 407.733 kb on + strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.740 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand, within Synpcc7942_0417 at 407.756 kb on - strand at 407.777 kb on - strand, within Synpcc7942_0417 at 407.850 kb on + strand, within Synpcc7942_0417 at 408.004 kb on + strand, within Synpcc7942_0417 at 408.101 kb on + strand, within Synpcc7942_0417 at 408.108 kb on - strand, within Synpcc7942_0417 at 408.179 kb on + strand, within Synpcc7942_0417 at 408.190 kb on + strand, within Synpcc7942_0417 at 408.213 kb on - strand at 408.223 kb on - strand at 408.262 kb on - strand at 408.303 kb on - strand at 408.318 kb on + strand at 408.388 kb on - strand at 408.394 kb on + strand at 408.404 kb on + strand at 408.456 kb on - strand at 408.497 kb on + strand at 408.504 kb on + strand at 408.504 kb on + strand at 408.504 kb on + strand at 408.541 kb on + strand, within Synpcc7942_0418 at 408.567 kb on + strand, within Synpcc7942_0418 at 408.601 kb on - strand, within Synpcc7942_0418 at 408.656 kb on + strand, within Synpcc7942_0418 at 408.687 kb on + strand, within Synpcc7942_0418 at 408.706 kb on + strand at 408.714 kb on - strand, within Synpcc7942_0418 at 408.714 kb on - strand, within Synpcc7942_0418 at 408.714 kb on - strand, within Synpcc7942_0418 at 408.806 kb on + strand, within Synpcc7942_0418 at 408.806 kb on + strand, within Synpcc7942_0418 at 408.814 kb on - strand at 408.814 kb on - strand at 408.844 kb on + strand at 408.844 kb on + strand at 408.881 kb on - strand at 408.881 kb on - strand at 408.881 kb on - strand at 408.908 kb on - strand at 408.938 kb on + strand at 408.942 kb on - strand at 408.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 405,856 + Synpcc7942_0415 0.70 -0.3 405,856 + Synpcc7942_0415 0.70 +0.6 405,884 + Synpcc7942_0415 0.73 -0.4 405,884 + Synpcc7942_0415 0.73 -0.5 405,884 + Synpcc7942_0415 0.73 +0.3 405,904 + Synpcc7942_0415 0.75 +0.1 405,907 - Synpcc7942_0415 0.76 -1.2 405,918 + Synpcc7942_0415 0.77 +0.1 405,939 + Synpcc7942_0415 0.79 +0.2 405,955 + Synpcc7942_0415 0.80 +0.2 405,958 + Synpcc7942_0415 0.81 -2.5 405,958 + -0.7 405,958 + Synpcc7942_0415 0.81 +0.6 406,008 - Synpcc7942_0415 0.86 +0.3 406,051 + +1.6 406,056 + -0.2 406,056 + -0.4 406,062 + +0.6 406,090 + +1.2 406,107 - +0.6 406,107 - +0.5 406,117 - +1.2 406,131 + -2.7 406,139 - -1.0 406,153 + -0.1 406,155 + -0.2 406,155 + +0.3 406,161 - -0.7 406,163 - -1.7 406,163 - -1.5 406,165 + -0.8 406,172 + -1.3 406,173 - -2.7 406,173 - -0.6 406,180 - -0.3 406,222 - -0.6 406,245 + +0.2 406,263 - +0.5 406,484 + Synpcc7942_0416 0.25 -2.5 406,500 + Synpcc7942_0416 0.29 -3.3 406,533 + +0.5 406,547 + +2.1 406,555 - Synpcc7942_0416 0.43 -1.6 406,555 - Synpcc7942_0416 0.43 -2.9 406,562 + Synpcc7942_0416 0.45 -2.9 406,583 + Synpcc7942_0416 0.51 -3.9 406,659 + Synpcc7942_0416 0.70 -1.0 406,667 - Synpcc7942_0416 0.72 -3.6 406,690 - Synpcc7942_0416 0.78 -0.7 406,690 - Synpcc7942_0416 0.78 -1.2 406,716 + Synpcc7942_0416 0.85 -3.2 406,724 - Synpcc7942_0416 0.87 -1.9 406,773 + -3.4 406,798 + +1.8 406,808 - -2.1 406,868 - -2.3 406,934 + -1.9 406,987 - -2.4 407,036 + Synpcc7942_0417 0.12 -0.9 407,039 - Synpcc7942_0417 0.12 -2.8 407,041 + Synpcc7942_0417 0.13 -1.4 407,044 - Synpcc7942_0417 0.13 -1.4 407,044 - Synpcc7942_0417 0.13 -1.4 407,049 - Synpcc7942_0417 0.13 -0.8 407,088 - Synpcc7942_0417 0.16 -2.7 407,132 + Synpcc7942_0417 0.19 -2.6 407,174 + Synpcc7942_0417 0.21 -3.4 407,184 + Synpcc7942_0417 0.22 -3.0 407,197 - +0.8 407,204 + Synpcc7942_0417 0.23 -3.7 407,283 + Synpcc7942_0417 0.29 -2.9 407,350 + Synpcc7942_0417 0.33 -3.0 407,376 + Synpcc7942_0417 0.35 -3.4 407,449 + Synpcc7942_0417 0.40 -2.0 407,556 + +0.1 407,612 + Synpcc7942_0417 0.50 -3.6 407,624 + Synpcc7942_0417 0.51 -3.6 407,624 + Synpcc7942_0417 0.51 -2.1 407,624 + Synpcc7942_0417 0.51 -1.6 407,657 - Synpcc7942_0417 0.53 -2.6 407,732 + -0.5 407,733 + Synpcc7942_0417 0.58 -1.9 407,740 - Synpcc7942_0417 0.59 -3.1 407,740 - Synpcc7942_0417 0.59 -2.9 407,756 - Synpcc7942_0417 0.60 -1.8 407,756 - +1.1 407,777 - Synpcc7942_0417 0.61 -3.0 407,850 + Synpcc7942_0417 0.66 -3.4 408,004 + Synpcc7942_0417 0.76 -3.2 408,101 + Synpcc7942_0417 0.83 -1.6 408,108 - Synpcc7942_0417 0.83 -2.1 408,179 + Synpcc7942_0417 0.88 -0.1 408,190 + Synpcc7942_0417 0.89 -1.2 408,213 - -1.2 408,223 - -0.6 408,262 - +0.1 408,303 - -2.8 408,318 + -1.3 408,388 - -1.5 408,394 + -4.2 408,404 + -1.9 408,456 - -4.1 408,497 + -2.4 408,504 + -3.2 408,504 + -2.1 408,504 + -3.7 408,541 + Synpcc7942_0418 0.13 -1.8 408,567 + Synpcc7942_0418 0.21 -2.7 408,601 - Synpcc7942_0418 0.30 -4.6 408,656 + Synpcc7942_0418 0.46 -3.2 408,687 + Synpcc7942_0418 0.55 -2.7 408,706 + -0.9 408,714 - Synpcc7942_0418 0.63 -2.0 408,714 - Synpcc7942_0418 0.63 -1.6 408,714 - Synpcc7942_0418 0.63 -2.5 408,806 + Synpcc7942_0418 0.89 -1.4 408,806 + Synpcc7942_0418 0.89 -1.3 408,814 - -3.0 408,814 - -2.7 408,844 + -0.2 408,844 + -1.0 408,881 - +0.8 408,881 - -0.6 408,881 - -1.0 408,908 - -0.6 408,938 + -1.0 408,942 - +0.0 408,953 - -0.6
Or see this region's nucleotide sequence