Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0410 and trpA are separated by 168 nucleotides trpA and Synpcc7942_0412 are separated by 30 nucleotides Synpcc7942_0412 and ndhL are separated by 0 nucleotides ndhL and Synpcc7942_0414 are separated by 247 nucleotides
Synpcc7942_0410: Synpcc7942_0410 - hypothetical protein, at 401,750 to 402,022
_0410
Synpcc7942_0411: trpA - tryptophan synthase subunit alpha, at 402,191 to 402,991
trpA
Synpcc7942_0412: Synpcc7942_0412 - hypothetical protein, at 403,022 to 403,351
_0412
Synpcc7942_0413: ndhL - hypothetical protein, at 403,352 to 403,768
ndhL
Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188
_0414
Position (kb) 403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 402.056 kb on + strand at 402.056 kb on + strand at 402.065 kb on + strand at 402.073 kb on - strand at 402.079 kb on + strand at 402.159 kb on + strand at 402.174 kb on + strand at 402.197 kb on - strand at 403.028 kb on - strand at 403.070 kb on - strand, within Synpcc7942_0412 at 403.074 kb on + strand, within Synpcc7942_0412 at 403.091 kb on - strand, within Synpcc7942_0412 at 403.176 kb on + strand, within Synpcc7942_0412 at 403.210 kb on + strand, within Synpcc7942_0412 at 403.218 kb on - strand, within Synpcc7942_0412 at 403.221 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.297 kb on - strand, within Synpcc7942_0412 at 403.559 kb on + strand, within ndhL at 403.570 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.595 kb on + strand, within ndhL at 403.968 kb on + strand at 403.994 kb on - strand at 404.005 kb on - strand at 404.093 kb on - strand at 404.139 kb on - strand, within Synpcc7942_0414 at 404.139 kb on - strand, within Synpcc7942_0414 at 404.148 kb on + strand, within Synpcc7942_0414 at 404.155 kb on + strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.193 kb on - strand, within Synpcc7942_0414 at 404.249 kb on + strand, within Synpcc7942_0414 at 404.253 kb on + strand, within Synpcc7942_0414 at 404.261 kb on + strand, within Synpcc7942_0414 at 404.261 kb on - strand, within Synpcc7942_0414 at 404.267 kb on - strand, within Synpcc7942_0414 at 404.317 kb on - strand, within Synpcc7942_0414
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 402,056 + +0.7 402,056 + +1.0 402,065 + -0.9 402,073 - -0.7 402,079 + -0.5 402,159 + -0.8 402,174 + +0.5 402,197 - -0.5 403,028 - +0.2 403,070 - Synpcc7942_0412 0.15 +0.5 403,074 + Synpcc7942_0412 0.16 -1.8 403,091 - Synpcc7942_0412 0.21 +0.2 403,176 + Synpcc7942_0412 0.47 -0.7 403,210 + Synpcc7942_0412 0.57 -3.1 403,218 - Synpcc7942_0412 0.59 -1.5 403,221 + Synpcc7942_0412 0.60 -1.8 403,287 + Synpcc7942_0412 0.80 -2.8 403,287 + Synpcc7942_0412 0.80 +0.3 403,287 + Synpcc7942_0412 0.80 -3.6 403,295 - Synpcc7942_0412 0.83 -2.8 403,295 - Synpcc7942_0412 0.83 -1.7 403,295 - Synpcc7942_0412 0.83 -3.6 403,295 - Synpcc7942_0412 0.83 -2.6 403,297 - Synpcc7942_0412 0.83 -1.6 403,559 + ndhL Synpcc7942_0413 0.50 -1.8 403,570 + ndhL Synpcc7942_0413 0.52 -1.3 403,572 + ndhL Synpcc7942_0413 0.53 -0.0 403,572 + ndhL Synpcc7942_0413 0.53 -1.6 403,580 - ndhL Synpcc7942_0413 0.55 -0.8 403,580 - ndhL Synpcc7942_0413 0.55 -1.8 403,595 + ndhL Synpcc7942_0413 0.58 -0.3 403,968 + +0.8 403,994 - -1.4 404,005 - +0.3 404,093 - -1.8 404,139 - Synpcc7942_0414 0.10 -1.0 404,139 - Synpcc7942_0414 0.10 -1.2 404,148 + Synpcc7942_0414 0.11 -0.8 404,155 + Synpcc7942_0414 0.12 -3.2 404,163 - Synpcc7942_0414 0.13 -0.5 404,163 - Synpcc7942_0414 0.13 -2.7 404,186 + Synpcc7942_0414 0.14 -2.1 404,186 + Synpcc7942_0414 0.14 -1.1 404,193 - Synpcc7942_0414 0.15 -1.0 404,249 + Synpcc7942_0414 0.20 -2.5 404,253 + Synpcc7942_0414 0.20 -1.6 404,261 + Synpcc7942_0414 0.21 -0.7 404,261 - Synpcc7942_0414 0.21 -1.7 404,267 - Synpcc7942_0414 0.21 -0.2 404,317 - Synpcc7942_0414 0.26 -2.5
Or see this region's nucleotide sequence