Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0399 and trpG are separated by 33 nucleotides trpG and dgkA are separated by 64 nucleotides
Synpcc7942_0399: Synpcc7942_0399 - hypothetical protein, at 393,793 to 394,545
_0399
Synpcc7942_0400: trpG - anthranilate synthase, component II, at 394,579 to 395,181
trpG
Synpcc7942_0401: dgkA - diacylglycerol kinase, at 395,246 to 395,731
dgkA
Position (kb) 395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 394.279 kb on + strand, within Synpcc7942_0399 at 394.307 kb on - strand, within Synpcc7942_0399 at 394.322 kb on - strand, within Synpcc7942_0399 at 394.342 kb on + strand, within Synpcc7942_0399 at 394.367 kb on + strand, within Synpcc7942_0399 at 394.431 kb on - strand, within Synpcc7942_0399 at 394.456 kb on + strand, within Synpcc7942_0399 at 394.457 kb on + strand, within Synpcc7942_0399 at 394.459 kb on - strand, within Synpcc7942_0399 at 394.462 kb on + strand, within Synpcc7942_0399 at 394.477 kb on + strand at 394.570 kb on + strand at 395.240 kb on - strand at 395.263 kb on + strand at 395.276 kb on - strand at 395.293 kb on - strand at 395.293 kb on - strand at 395.298 kb on + strand, within dgkA at 395.324 kb on + strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.332 kb on - strand, within dgkA at 395.416 kb on - strand at 395.416 kb on - strand, within dgkA at 395.416 kb on - strand, within dgkA at 395.418 kb on + strand at 395.418 kb on + strand, within dgkA at 395.418 kb on + strand, within dgkA at 395.423 kb on + strand, within dgkA at 395.426 kb on - strand, within dgkA at 395.452 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.459 kb on + strand, within dgkA at 395.466 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.467 kb on - strand, within dgkA at 395.476 kb on + strand, within dgkA at 395.481 kb on + strand, within dgkA at 395.488 kb on + strand, within dgkA at 395.491 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.496 kb on - strand, within dgkA at 395.527 kb on + strand, within dgkA at 395.535 kb on - strand, within dgkA at 395.554 kb on + strand, within dgkA at 395.554 kb on + strand, within dgkA at 395.564 kb on - strand, within dgkA at 395.570 kb on + strand, within dgkA at 395.573 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.578 kb on - strand, within dgkA at 395.598 kb on + strand at 395.606 kb on - strand, within dgkA at 395.606 kb on - strand, within dgkA at 395.616 kb on - strand at 395.621 kb on + strand, within dgkA at 395.656 kb on + strand, within dgkA at 395.666 kb on + strand, within dgkA at 395.674 kb on - strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.677 kb on + strand, within dgkA at 395.685 kb on - strand at 395.699 kb on - strand at 395.699 kb on - strand at 395.700 kb on + strand at 395.700 kb on + strand at 395.701 kb on + strand at 395.708 kb on - strand at 395.721 kb on - strand at 395.721 kb on - strand at 395.721 kb on - strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.723 kb on + strand at 395.725 kb on + strand at 395.731 kb on - strand at 395.731 kb on - strand at 395.746 kb on + strand at 395.746 kb on + strand at 395.753 kb on - strand at 395.793 kb on + strand at 395.805 kb on + strand at 395.805 kb on + strand at 395.806 kb on + strand at 395.806 kb on + strand at 395.813 kb on - strand at 395.898 kb on + strand at 395.903 kb on + strand at 395.906 kb on - strand at 395.906 kb on - strand at 396.013 kb on + strand at 396.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 394,279 + Synpcc7942_0399 0.65 -0.6 394,307 - Synpcc7942_0399 0.68 +0.4 394,322 - Synpcc7942_0399 0.70 +0.3 394,342 + Synpcc7942_0399 0.73 -1.1 394,367 + Synpcc7942_0399 0.76 -0.5 394,431 - Synpcc7942_0399 0.85 -1.0 394,456 + Synpcc7942_0399 0.88 -0.7 394,457 + Synpcc7942_0399 0.88 -1.6 394,459 - Synpcc7942_0399 0.88 -0.4 394,462 + Synpcc7942_0399 0.89 -0.4 394,477 + -0.4 394,570 + +1.4 395,240 - -0.2 395,263 + -1.9 395,276 - -2.5 395,293 - -4.1 395,293 - +0.1 395,298 + dgkA Synpcc7942_0401 0.11 -2.9 395,324 + dgkA Synpcc7942_0401 0.16 -3.7 395,332 - dgkA Synpcc7942_0401 0.18 -4.2 395,332 - dgkA Synpcc7942_0401 0.18 -3.7 395,332 - dgkA Synpcc7942_0401 0.18 +0.1 395,332 - dgkA Synpcc7942_0401 0.18 -0.9 395,416 - -0.2 395,416 - dgkA Synpcc7942_0401 0.35 -0.7 395,416 - dgkA Synpcc7942_0401 0.35 -2.2 395,418 + -0.2 395,418 + dgkA Synpcc7942_0401 0.35 -0.7 395,418 + dgkA Synpcc7942_0401 0.35 -3.1 395,423 + dgkA Synpcc7942_0401 0.36 -1.2 395,426 - dgkA Synpcc7942_0401 0.37 -3.0 395,452 + dgkA Synpcc7942_0401 0.42 -2.3 395,459 + dgkA Synpcc7942_0401 0.44 -3.3 395,459 + dgkA Synpcc7942_0401 0.44 -0.9 395,459 + dgkA Synpcc7942_0401 0.44 -1.9 395,466 - dgkA Synpcc7942_0401 0.45 -2.5 395,467 - dgkA Synpcc7942_0401 0.45 -3.5 395,467 - dgkA Synpcc7942_0401 0.45 -1.3 395,467 - dgkA Synpcc7942_0401 0.45 -3.1 395,467 - dgkA Synpcc7942_0401 0.45 -2.9 395,476 + dgkA Synpcc7942_0401 0.47 -2.0 395,481 + dgkA Synpcc7942_0401 0.48 -2.9 395,488 + dgkA Synpcc7942_0401 0.50 -4.7 395,491 - dgkA Synpcc7942_0401 0.50 -2.7 395,496 - dgkA Synpcc7942_0401 0.51 -4.7 395,496 - dgkA Synpcc7942_0401 0.51 -2.1 395,496 - dgkA Synpcc7942_0401 0.51 -2.6 395,527 + dgkA Synpcc7942_0401 0.58 -1.1 395,535 - dgkA Synpcc7942_0401 0.59 -3.0 395,554 + dgkA Synpcc7942_0401 0.63 -4.1 395,554 + dgkA Synpcc7942_0401 0.63 -1.2 395,564 - dgkA Synpcc7942_0401 0.65 -1.7 395,570 + dgkA Synpcc7942_0401 0.67 -3.9 395,573 - dgkA Synpcc7942_0401 0.67 -1.4 395,578 - dgkA Synpcc7942_0401 0.68 -1.9 395,578 - dgkA Synpcc7942_0401 0.68 -4.3 395,578 - dgkA Synpcc7942_0401 0.68 -1.6 395,598 + +0.1 395,606 - dgkA Synpcc7942_0401 0.74 -2.0 395,606 - dgkA Synpcc7942_0401 0.74 +0.5 395,616 - +0.5 395,621 + dgkA Synpcc7942_0401 0.77 -2.2 395,656 + dgkA Synpcc7942_0401 0.84 -2.2 395,666 + dgkA Synpcc7942_0401 0.86 -1.7 395,674 - dgkA Synpcc7942_0401 0.88 -1.2 395,677 + dgkA Synpcc7942_0401 0.89 -2.3 395,677 + dgkA Synpcc7942_0401 0.89 -2.2 395,677 + dgkA Synpcc7942_0401 0.89 -1.2 395,685 - +0.1 395,699 - -3.5 395,699 - -4.2 395,700 + +0.6 395,700 + -0.5 395,701 + -1.2 395,708 - -0.1 395,721 - -2.1 395,721 - +0.1 395,721 - +0.2 395,723 + +0.0 395,723 + +1.7 395,723 + -0.9 395,723 + -1.4 395,723 + -0.4 395,723 + -0.9 395,723 + -0.7 395,725 + -1.8 395,731 - -0.4 395,731 - +0.4 395,746 + -0.1 395,746 + -0.7 395,753 - +0.9 395,793 + -1.6 395,805 + +0.4 395,805 + -0.4 395,806 + +0.7 395,806 + +0.3 395,813 - -0.0 395,898 + -1.0 395,903 + -2.2 395,906 - -0.4 395,906 - +1.1 396,013 + -0.6 396,418 + +0.3
Or see this region's nucleotide sequence