Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0360 and cp12 are separated by 232 nucleotides cp12 and Synpcc7942_0362 are separated by 124 nucleotides Synpcc7942_0362 and Synpcc7942_0363 are separated by 25 nucleotides Synpcc7942_0363 and Synpcc7942_0364 are separated by 71 nucleotides
Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299
_0360
Synpcc7942_0361: cp12 - hypothetical protein, at 354,532 to 354,759
cp12
Synpcc7942_0362: Synpcc7942_0362 - hypothetical protein, at 354,884 to 355,483
_0362
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Synpcc7942_0364: Synpcc7942_0364 - hypothetical protein, at 355,865 to 356,416
_0364
Position (kb) 354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 353.906 kb on - strand, within Synpcc7942_0360 at 353.926 kb on - strand, within Synpcc7942_0360 at 353.975 kb on + strand, within Synpcc7942_0360 at 353.995 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 354.022 kb on + strand, within Synpcc7942_0360 at 354.030 kb on - strand, within Synpcc7942_0360 at 354.070 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.079 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.113 kb on + strand, within Synpcc7942_0360 at 354.153 kb on - strand, within Synpcc7942_0360 at 354.199 kb on + strand at 354.202 kb on - strand at 354.223 kb on + strand at 354.223 kb on + strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.228 kb on + strand at 354.241 kb on + strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.281 kb on - strand at 354.281 kb on - strand at 354.286 kb on + strand at 354.291 kb on - strand at 354.291 kb on - strand at 354.309 kb on - strand at 354.330 kb on + strand at 354.330 kb on + strand at 354.334 kb on - strand at 354.353 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.357 kb on - strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.376 kb on - strand at 354.432 kb on + strand at 354.451 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.469 kb on - strand at 354.502 kb on - strand at 354.509 kb on + strand at 354.520 kb on - strand at 354.551 kb on + strand at 354.569 kb on - strand, within cp12 at 354.573 kb on + strand, within cp12 at 354.594 kb on - strand, within cp12 at 354.652 kb on + strand, within cp12 at 354.673 kb on + strand, within cp12 at 354.714 kb on - strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.764 kb on - strand at 354.864 kb on + strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.875 kb on - strand at 354.973 kb on + strand, within Synpcc7942_0362 at 354.993 kb on - strand, within Synpcc7942_0362 at 355.045 kb on + strand, within Synpcc7942_0362 at 355.379 kb on + strand, within Synpcc7942_0362 at 355.429 kb on - strand at 355.430 kb on - strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.486 kb on - strand at 355.486 kb on - strand at 355.492 kb on - strand at 355.505 kb on + strand at 355.505 kb on + strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.528 kb on + strand at 355.535 kb on + strand at 355.556 kb on + strand, within Synpcc7942_0363 at 355.564 kb on - strand, within Synpcc7942_0363 at 355.577 kb on + strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.597 kb on - strand, within Synpcc7942_0363 at 355.651 kb on + strand, within Synpcc7942_0363 at 355.657 kb on + strand, within Synpcc7942_0363 at 355.659 kb on - strand, within Synpcc7942_0363 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363 at 355.762 kb on - strand, within Synpcc7942_0363 at 355.859 kb on - strand at 355.924 kb on - strand, within Synpcc7942_0364 at 355.942 kb on - strand, within Synpcc7942_0364 at 355.956 kb on + strand, within Synpcc7942_0364 at 355.962 kb on + strand, within Synpcc7942_0364 at 355.964 kb on - strand, within Synpcc7942_0364 at 355.970 kb on - strand, within Synpcc7942_0364 at 356.001 kb on + strand, within Synpcc7942_0364 at 356.022 kb on + strand, within Synpcc7942_0364 at 356.032 kb on - strand, within Synpcc7942_0364 at 356.049 kb on - strand, within Synpcc7942_0364 at 356.051 kb on - strand, within Synpcc7942_0364 at 356.085 kb on + strand at 356.085 kb on + strand, within Synpcc7942_0364 at 356.101 kb on + strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.126 kb on - strand, within Synpcc7942_0364 at 356.128 kb on - strand, within Synpcc7942_0364 at 356.138 kb on - strand, within Synpcc7942_0364 at 356.142 kb on - strand, within Synpcc7942_0364 at 356.203 kb on - strand, within Synpcc7942_0364 at 356.205 kb on - strand, within Synpcc7942_0364 at 356.209 kb on - strand, within Synpcc7942_0364 at 356.213 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.230 kb on + strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.245 kb on + strand, within Synpcc7942_0364 at 356.274 kb on - strand, within Synpcc7942_0364 at 356.281 kb on - strand, within Synpcc7942_0364 at 356.285 kb on + strand, within Synpcc7942_0364 at 356.287 kb on + strand, within Synpcc7942_0364 at 356.291 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.335 kb on + strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.402 kb on - strand at 356.411 kb on + strand at 356.419 kb on - strand at 356.459 kb on - strand at 356.459 kb on - strand at 356.482 kb on - strand at 356.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 353,906 - Synpcc7942_0360 0.67 -0.1 353,926 - Synpcc7942_0360 0.69 -0.1 353,975 + Synpcc7942_0360 0.73 -0.2 353,995 - Synpcc7942_0360 0.75 -0.1 353,996 - Synpcc7942_0360 0.75 +1.4 353,996 - Synpcc7942_0360 0.75 +0.2 354,022 + Synpcc7942_0360 0.77 -0.1 354,030 - Synpcc7942_0360 0.77 +0.3 354,070 - Synpcc7942_0360 0.81 -0.2 354,077 - Synpcc7942_0360 0.81 +0.1 354,077 - Synpcc7942_0360 0.81 +0.2 354,079 + Synpcc7942_0360 0.82 +0.0 354,095 + Synpcc7942_0360 0.83 +1.5 354,095 + Synpcc7942_0360 0.83 -0.1 354,113 + Synpcc7942_0360 0.84 -0.1 354,153 - Synpcc7942_0360 0.88 -1.8 354,199 + -1.2 354,202 - +0.1 354,223 + -0.3 354,223 + -0.1 354,226 - -0.7 354,226 - +0.5 354,226 - +0.3 354,228 + -1.4 354,241 + +0.9 354,273 + +0.1 354,273 + +1.2 354,281 - +1.5 354,281 - -1.1 354,286 + +0.6 354,291 - +0.3 354,291 - -0.4 354,309 - +0.5 354,330 + +0.3 354,330 + -1.9 354,334 - -1.2 354,353 + -0.1 354,356 + -0.5 354,357 - +0.5 354,357 - +0.6 354,368 + +1.4 354,368 + +0.1 354,368 + +0.4 354,376 - +0.4 354,432 + -0.2 354,451 + -0.5 354,461 + -1.0 354,461 + -0.0 354,461 + +0.1 354,469 - -0.1 354,502 - +0.4 354,509 + +0.5 354,520 - +0.5 354,551 + +0.5 354,569 - cp12 Synpcc7942_0361 0.16 -1.6 354,573 + cp12 Synpcc7942_0361 0.18 -3.0 354,594 - cp12 Synpcc7942_0361 0.27 -2.6 354,652 + cp12 Synpcc7942_0361 0.53 -1.3 354,673 + cp12 Synpcc7942_0361 0.62 +0.9 354,714 - cp12 Synpcc7942_0361 0.80 -1.1 354,730 + cp12 Synpcc7942_0361 0.87 -1.5 354,730 + cp12 Synpcc7942_0361 0.87 +0.5 354,764 - +0.2 354,864 + +0.4 354,872 - -0.5 354,872 - -0.4 354,872 - -0.5 354,875 - -0.0 354,973 + Synpcc7942_0362 0.15 +0.2 354,993 - Synpcc7942_0362 0.18 -1.6 355,045 + Synpcc7942_0362 0.27 -4.3 355,379 + Synpcc7942_0362 0.82 -3.0 355,429 - -1.1 355,430 - -1.9 355,478 + +0.7 355,478 + -0.2 355,478 + +0.7 355,486 - -0.6 355,486 - -0.4 355,492 - -1.7 355,505 + +0.2 355,505 + -0.2 355,513 - -0.4 355,513 - +0.7 355,513 - -0.6 355,528 + +0.4 355,535 + -0.1 355,556 + Synpcc7942_0363 0.16 -0.3 355,564 - Synpcc7942_0363 0.19 +0.6 355,577 + Synpcc7942_0363 0.24 +1.2 355,592 - Synpcc7942_0363 0.29 +1.1 355,592 - Synpcc7942_0363 0.29 -0.8 355,597 - Synpcc7942_0363 0.31 -0.3 355,651 + Synpcc7942_0363 0.50 +0.6 355,657 + Synpcc7942_0363 0.52 +0.4 355,659 - Synpcc7942_0363 0.53 +0.4 355,704 - Synpcc7942_0363 0.68 -0.2 355,709 - Synpcc7942_0363 0.70 +1.0 355,719 - Synpcc7942_0363 0.74 +0.1 355,734 - Synpcc7942_0363 0.79 +0.5 355,762 - Synpcc7942_0363 0.89 -0.8 355,859 - +2.2 355,924 - Synpcc7942_0364 0.11 -0.2 355,942 - Synpcc7942_0364 0.14 -1.5 355,956 + Synpcc7942_0364 0.16 -0.9 355,962 + Synpcc7942_0364 0.18 -0.8 355,964 - Synpcc7942_0364 0.18 -1.3 355,970 - Synpcc7942_0364 0.19 -0.4 356,001 + Synpcc7942_0364 0.25 -1.0 356,022 + Synpcc7942_0364 0.28 +0.6 356,032 - Synpcc7942_0364 0.30 -0.2 356,049 - Synpcc7942_0364 0.33 +0.6 356,051 - Synpcc7942_0364 0.34 +1.1 356,085 + +1.7 356,085 + Synpcc7942_0364 0.40 -0.7 356,101 + Synpcc7942_0364 0.43 +0.3 356,104 - Synpcc7942_0364 0.43 -0.3 356,104 - Synpcc7942_0364 0.43 +0.4 356,104 - Synpcc7942_0364 0.43 +0.1 356,126 - Synpcc7942_0364 0.47 +0.2 356,128 - Synpcc7942_0364 0.48 -0.8 356,138 - Synpcc7942_0364 0.49 -0.4 356,142 - Synpcc7942_0364 0.50 +1.2 356,203 - Synpcc7942_0364 0.61 -0.3 356,205 - Synpcc7942_0364 0.62 -0.3 356,209 - Synpcc7942_0364 0.62 -0.5 356,213 + Synpcc7942_0364 0.63 -0.1 356,229 + Synpcc7942_0364 0.66 +0.2 356,229 + Synpcc7942_0364 0.66 +0.8 356,230 + Synpcc7942_0364 0.66 +0.0 356,237 - Synpcc7942_0364 0.67 -0.4 356,237 - Synpcc7942_0364 0.67 -2.5 356,245 + Synpcc7942_0364 0.69 +0.2 356,274 - Synpcc7942_0364 0.74 -2.4 356,281 - Synpcc7942_0364 0.75 +1.3 356,285 + Synpcc7942_0364 0.76 -1.2 356,287 + Synpcc7942_0364 0.76 -0.6 356,291 - Synpcc7942_0364 0.77 -0.4 356,293 - Synpcc7942_0364 0.78 +0.1 356,293 - Synpcc7942_0364 0.78 -0.8 356,293 - Synpcc7942_0364 0.78 -0.1 356,332 + Synpcc7942_0364 0.85 +0.8 356,332 + Synpcc7942_0364 0.85 +0.1 356,332 + Synpcc7942_0364 0.85 -0.9 356,332 + Synpcc7942_0364 0.85 -3.3 356,335 + Synpcc7942_0364 0.85 -0.2 356,340 - Synpcc7942_0364 0.86 -0.2 356,340 - Synpcc7942_0364 0.86 -0.4 356,402 - -0.8 356,411 + -1.3 356,419 - +0.6 356,459 - +0.4 356,459 - +1.0 356,482 - -1.3 356,482 - +0.7
Or see this region's nucleotide sequence