Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0317 and Synpcc7942_0318 are separated by 286 nucleotides Synpcc7942_0318 and Synpcc7942_0319 are separated by 64 nucleotides Synpcc7942_0319 and galE are separated by 29 nucleotides
Synpcc7942_0317: Synpcc7942_0317 - hypothetical protein, at 314,897 to 315,355
_0317
Synpcc7942_0318: Synpcc7942_0318 - hypothetical protein, at 315,642 to 316,097
_0318
Synpcc7942_0319: Synpcc7942_0319 - hemolysin A, at 316,162 to 316,980
_0319
Synpcc7942_0320: galE - UDP-galactose 4-epimerase, at 317,010 to 318,008
galE
Position (kb) 316
317 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 315.189 kb on + strand, within Synpcc7942_0317 at 315.213 kb on + strand, within Synpcc7942_0317 at 315.221 kb on - strand, within Synpcc7942_0317 at 315.234 kb on + strand, within Synpcc7942_0317 at 315.242 kb on - strand, within Synpcc7942_0317 at 315.242 kb on - strand, within Synpcc7942_0317 at 315.254 kb on - strand, within Synpcc7942_0317 at 315.297 kb on - strand, within Synpcc7942_0317 at 315.302 kb on + strand, within Synpcc7942_0317 at 315.302 kb on + strand, within Synpcc7942_0317 at 315.318 kb on + strand at 315.322 kb on + strand at 315.323 kb on + strand at 315.324 kb on + strand at 315.332 kb on - strand at 315.332 kb on - strand at 315.354 kb on - strand at 315.413 kb on - strand at 315.418 kb on - strand at 315.423 kb on - strand at 315.433 kb on - strand at 315.442 kb on + strand at 315.458 kb on - strand at 315.485 kb on + strand at 315.493 kb on + strand at 315.493 kb on - strand at 315.501 kb on - strand at 315.501 kb on - strand at 315.502 kb on - strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on - strand at 315.527 kb on - strand at 315.527 kb on - strand at 315.527 kb on - strand at 315.534 kb on + strand at 315.542 kb on - strand at 315.547 kb on + strand at 315.555 kb on - strand at 315.564 kb on - strand at 315.568 kb on + strand at 315.570 kb on - strand at 315.570 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.576 kb on - strand at 315.581 kb on + strand at 315.586 kb on + strand at 315.586 kb on + strand at 315.594 kb on - strand at 315.637 kb on + strand at 315.645 kb on - strand at 315.654 kb on - strand at 315.694 kb on + strand at 315.702 kb on - strand, within Synpcc7942_0318 at 315.711 kb on - strand, within Synpcc7942_0318 at 315.713 kb on + strand, within Synpcc7942_0318 at 315.745 kb on - strand, within Synpcc7942_0318 at 315.809 kb on + strand, within Synpcc7942_0318 at 315.856 kb on + strand, within Synpcc7942_0318 at 315.884 kb on - strand, within Synpcc7942_0318 at 315.889 kb on - strand, within Synpcc7942_0318 at 315.909 kb on + strand, within Synpcc7942_0318 at 315.915 kb on + strand, within Synpcc7942_0318 at 315.915 kb on + strand, within Synpcc7942_0318 at 315.959 kb on + strand, within Synpcc7942_0318 at 315.993 kb on + strand, within Synpcc7942_0318 at 315.993 kb on + strand, within Synpcc7942_0318 at 315.993 kb on + strand, within Synpcc7942_0318 at 316.038 kb on - strand, within Synpcc7942_0318 at 316.053 kb on - strand at 316.055 kb on + strand at 316.080 kb on + strand at 316.080 kb on + strand at 316.080 kb on + strand at 316.080 kb on + strand at 316.080 kb on + strand at 316.088 kb on - strand at 316.088 kb on - strand at 316.088 kb on - strand at 316.093 kb on + strand at 316.103 kb on + strand at 316.103 kb on + strand at 316.106 kb on - strand at 316.111 kb on - strand at 316.111 kb on - strand at 316.111 kb on - strand at 316.125 kb on + strand at 316.141 kb on + strand at 316.149 kb on - strand at 316.159 kb on - strand at 316.165 kb on + strand at 316.171 kb on - strand at 316.173 kb on - strand at 316.184 kb on - strand at 316.196 kb on + strand at 316.203 kb on + strand at 316.204 kb on - strand at 316.231 kb on + strand at 316.233 kb on - strand at 316.254 kb on - strand, within Synpcc7942_0319 at 316.269 kb on - strand, within Synpcc7942_0319 at 316.297 kb on - strand, within Synpcc7942_0319 at 316.340 kb on - strand, within Synpcc7942_0319 at 316.362 kb on + strand, within Synpcc7942_0319 at 316.405 kb on - strand, within Synpcc7942_0319 at 316.417 kb on - strand, within Synpcc7942_0319 at 316.474 kb on + strand, within Synpcc7942_0319 at 316.474 kb on + strand, within Synpcc7942_0319 at 316.481 kb on + strand, within Synpcc7942_0319 at 316.481 kb on + strand, within Synpcc7942_0319 at 316.482 kb on - strand, within Synpcc7942_0319 at 316.515 kb on + strand, within Synpcc7942_0319 at 316.582 kb on - strand, within Synpcc7942_0319 at 316.589 kb on - strand, within Synpcc7942_0319 at 316.659 kb on - strand, within Synpcc7942_0319 at 316.669 kb on - strand, within Synpcc7942_0319 at 316.669 kb on - strand, within Synpcc7942_0319 at 316.704 kb on + strand, within Synpcc7942_0319 at 316.709 kb on + strand, within Synpcc7942_0319 at 316.716 kb on + strand, within Synpcc7942_0319 at 316.716 kb on + strand, within Synpcc7942_0319 at 316.721 kb on + strand, within Synpcc7942_0319 at 316.807 kb on + strand, within Synpcc7942_0319 at 316.807 kb on + strand, within Synpcc7942_0319 at 316.815 kb on - strand, within Synpcc7942_0319 at 316.829 kb on + strand, within Synpcc7942_0319 at 316.829 kb on + strand, within Synpcc7942_0319 at 316.834 kb on + strand, within Synpcc7942_0319 at 316.842 kb on - strand, within Synpcc7942_0319 at 316.871 kb on + strand, within Synpcc7942_0319 at 316.884 kb on + strand, within Synpcc7942_0319 at 316.941 kb on + strand at 316.941 kb on + strand at 316.949 kb on - strand at 316.949 kb on - strand at 316.949 kb on - strand at 316.961 kb on - strand at 316.963 kb on + strand at 316.988 kb on - strand at 316.993 kb on + strand at 316.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 315,189 + Synpcc7942_0317 0.64 +0.2 315,213 + Synpcc7942_0317 0.69 +0.7 315,221 - Synpcc7942_0317 0.71 +1.2 315,234 + Synpcc7942_0317 0.73 -0.8 315,242 - Synpcc7942_0317 0.75 -1.0 315,242 - Synpcc7942_0317 0.75 -0.3 315,254 - Synpcc7942_0317 0.78 -0.5 315,297 - Synpcc7942_0317 0.87 -0.2 315,302 + Synpcc7942_0317 0.88 +0.8 315,302 + Synpcc7942_0317 0.88 -0.5 315,318 + -1.6 315,322 + -1.4 315,323 + -0.2 315,324 + +0.7 315,332 - -1.0 315,332 - +0.4 315,354 - -0.9 315,413 - +0.4 315,418 - +0.1 315,423 - +0.2 315,433 - +1.3 315,442 + +0.8 315,458 - +0.2 315,485 + -2.0 315,493 + -0.9 315,493 - -0.2 315,501 - +1.3 315,501 - +1.1 315,502 - -1.9 315,519 + +0.7 315,519 + +0.7 315,519 - +0.7 315,527 - +0.1 315,527 - -0.9 315,527 - +0.9 315,534 + +0.4 315,542 - +0.3 315,547 + +2.1 315,555 - -0.2 315,564 - -0.5 315,568 + -0.7 315,570 - -1.8 315,570 - +0.1 315,576 - -0.1 315,576 - -0.9 315,576 - +0.5 315,581 + +0.1 315,586 + +0.4 315,586 + -0.9 315,594 - +0.6 315,637 + -0.7 315,645 - -1.8 315,654 - +0.7 315,694 + -0.2 315,702 - Synpcc7942_0318 0.13 -0.8 315,711 - Synpcc7942_0318 0.15 -1.4 315,713 + Synpcc7942_0318 0.16 -0.1 315,745 - Synpcc7942_0318 0.23 +0.9 315,809 + Synpcc7942_0318 0.37 +0.4 315,856 + Synpcc7942_0318 0.47 -0.0 315,884 - Synpcc7942_0318 0.53 +1.1 315,889 - Synpcc7942_0318 0.54 -0.6 315,909 + Synpcc7942_0318 0.59 -0.3 315,915 + Synpcc7942_0318 0.60 +0.5 315,915 + Synpcc7942_0318 0.60 -0.2 315,959 + Synpcc7942_0318 0.70 -0.4 315,993 + Synpcc7942_0318 0.77 +0.9 315,993 + Synpcc7942_0318 0.77 +0.3 315,993 + Synpcc7942_0318 0.77 -2.0 316,038 - Synpcc7942_0318 0.87 -0.7 316,053 - +1.1 316,055 + +0.5 316,080 + -1.4 316,080 + -1.6 316,080 + -0.7 316,080 + -1.2 316,080 + -1.4 316,088 - +0.2 316,088 - -0.2 316,088 - -1.8 316,093 + -2.2 316,103 + +1.2 316,103 + -0.4 316,106 - -0.7 316,111 - -0.3 316,111 - +0.4 316,111 - +0.3 316,125 + +0.3 316,141 + -0.1 316,149 - +1.4 316,159 - +1.3 316,165 + -0.1 316,171 - +0.6 316,173 - -0.2 316,184 - -1.1 316,196 + -2.0 316,203 + -1.0 316,204 - -2.7 316,231 + -2.9 316,233 - -0.0 316,254 - Synpcc7942_0319 0.11 -1.1 316,269 - Synpcc7942_0319 0.13 -2.8 316,297 - Synpcc7942_0319 0.16 -1.3 316,340 - Synpcc7942_0319 0.22 +4.2 316,362 + Synpcc7942_0319 0.24 -3.1 316,405 - Synpcc7942_0319 0.30 -1.5 316,417 - Synpcc7942_0319 0.31 -2.7 316,474 + Synpcc7942_0319 0.38 -4.6 316,474 + Synpcc7942_0319 0.38 -2.4 316,481 + Synpcc7942_0319 0.39 -2.8 316,481 + Synpcc7942_0319 0.39 -2.3 316,482 - Synpcc7942_0319 0.39 -2.9 316,515 + Synpcc7942_0319 0.43 -3.0 316,582 - Synpcc7942_0319 0.51 -2.1 316,589 - Synpcc7942_0319 0.52 -3.3 316,659 - Synpcc7942_0319 0.61 -1.4 316,669 - Synpcc7942_0319 0.62 -1.9 316,669 - Synpcc7942_0319 0.62 -1.1 316,704 + Synpcc7942_0319 0.66 -1.5 316,709 + Synpcc7942_0319 0.67 -2.3 316,716 + Synpcc7942_0319 0.68 -3.3 316,716 + Synpcc7942_0319 0.68 -1.9 316,721 + Synpcc7942_0319 0.68 -2.4 316,807 + Synpcc7942_0319 0.79 -3.5 316,807 + Synpcc7942_0319 0.79 -1.8 316,815 - Synpcc7942_0319 0.80 -1.9 316,829 + Synpcc7942_0319 0.81 -2.8 316,829 + Synpcc7942_0319 0.81 -1.7 316,834 + Synpcc7942_0319 0.82 -3.2 316,842 - Synpcc7942_0319 0.83 -3.1 316,871 + Synpcc7942_0319 0.87 -5.3 316,884 + Synpcc7942_0319 0.88 -1.3 316,941 + -0.7 316,941 + -0.5 316,949 - -1.5 316,949 - -1.1 316,949 - -0.5 316,961 - -0.6 316,963 + -2.1 316,988 - +0.6 316,993 + -0.1 316,993 + -0.2
Or see this region's nucleotide sequence