Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sat and Synpcc7942_0296 are separated by 145 nucleotides Synpcc7942_0296 and ftsH are separated by 106 nucleotides
Synpcc7942_0295: sat - sulfate adenylyltransferase, at 291,417 to 292,604
sat
Synpcc7942_0296: Synpcc7942_0296 - hypothetical protein, at 292,750 to 294,765
_0296
Synpcc7942_0297: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 294,872 to 296,713
ftsH
Position (kb) 292
293
294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 292.079 kb on + strand, within sat at 292.089 kb on + strand, within sat at 292.570 kb on - strand at 292.594 kb on + strand at 292.610 kb on + strand at 292.618 kb on - strand at 292.620 kb on - strand at 292.729 kb on + strand at 292.741 kb on + strand at 293.045 kb on + strand, within Synpcc7942_0296 at 293.157 kb on - strand, within Synpcc7942_0296 at 293.252 kb on + strand, within Synpcc7942_0296 at 293.271 kb on - strand, within Synpcc7942_0296 at 293.271 kb on - strand, within Synpcc7942_0296 at 293.354 kb on - strand, within Synpcc7942_0296 at 293.415 kb on + strand, within Synpcc7942_0296 at 293.423 kb on - strand, within Synpcc7942_0296 at 293.612 kb on - strand, within Synpcc7942_0296 at 293.628 kb on - strand, within Synpcc7942_0296 at 293.642 kb on - strand, within Synpcc7942_0296 at 293.657 kb on - strand, within Synpcc7942_0296 at 293.871 kb on + strand, within Synpcc7942_0296 at 293.939 kb on + strand, within Synpcc7942_0296 at 294.064 kb on - strand, within Synpcc7942_0296 at 294.142 kb on + strand, within Synpcc7942_0296 at 294.153 kb on + strand, within Synpcc7942_0296 at 294.161 kb on - strand, within Synpcc7942_0296 at 294.236 kb on - strand, within Synpcc7942_0296 at 294.390 kb on - strand, within Synpcc7942_0296 at 294.393 kb on + strand, within Synpcc7942_0296 at 294.403 kb on + strand, within Synpcc7942_0296 at 294.475 kb on + strand, within Synpcc7942_0296 at 294.483 kb on - strand, within Synpcc7942_0296 at 294.612 kb on + strand at 294.620 kb on - strand at 294.669 kb on - strand at 294.682 kb on + strand at 294.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 292,079 + sat Synpcc7942_0295 0.56 -2.7 292,089 + sat Synpcc7942_0295 0.57 -2.1 292,570 - +2.7 292,594 + -0.8 292,610 + +0.4 292,618 - -0.5 292,620 - +0.5 292,729 + +0.3 292,741 + +0.1 293,045 + Synpcc7942_0296 0.15 -3.5 293,157 - Synpcc7942_0296 0.20 -1.7 293,252 + Synpcc7942_0296 0.25 -0.7 293,271 - Synpcc7942_0296 0.26 -0.5 293,271 - Synpcc7942_0296 0.26 -2.7 293,354 - Synpcc7942_0296 0.30 -3.4 293,415 + Synpcc7942_0296 0.33 -2.9 293,423 - Synpcc7942_0296 0.33 -0.2 293,612 - Synpcc7942_0296 0.43 -0.5 293,628 - Synpcc7942_0296 0.44 -3.2 293,642 - Synpcc7942_0296 0.44 -2.6 293,657 - Synpcc7942_0296 0.45 -2.8 293,871 + Synpcc7942_0296 0.56 -1.9 293,939 + Synpcc7942_0296 0.59 -1.7 294,064 - Synpcc7942_0296 0.65 -4.1 294,142 + Synpcc7942_0296 0.69 -0.8 294,153 + Synpcc7942_0296 0.70 -2.2 294,161 - Synpcc7942_0296 0.70 -2.1 294,236 - Synpcc7942_0296 0.74 -2.5 294,390 - Synpcc7942_0296 0.81 -1.6 294,393 + Synpcc7942_0296 0.81 -2.9 294,403 + Synpcc7942_0296 0.82 -0.3 294,475 + Synpcc7942_0296 0.86 -0.0 294,483 - Synpcc7942_0296 0.86 -2.0 294,612 + -0.4 294,620 - -0.6 294,669 - -3.0 294,682 + -3.3 294,751 + -2.8
Or see this region's nucleotide sequence