Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0148 and Synpcc7942_0149 overlap by 4 nucleotides Synpcc7942_0149 and Synpcc7942_0150 are separated by 7 nucleotides Synpcc7942_0150 and psfR are separated by 608 nucleotides
Synpcc7942_0148: Synpcc7942_0148 - hypothetical protein, at 148,646 to 150,190
_0148
Synpcc7942_0149: Synpcc7942_0149 - methylated-DNA--protein-cysteine methyltransferase, at 150,187 to 150,744
_0149
Synpcc7942_0150: Synpcc7942_0150 - Dolichyl-phosphate beta-D-mannosyltransferase, at 150,752 to 151,918
_0150
Synpcc7942_0151: psfR - response regulator receiver modulated diguanylate cyclase, at 152,527 to 154,917
psfR
Position (kb) 150
151
152 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 150.185 kb on - strand at 150.191 kb on - strand at 150.214 kb on + strand at 150.224 kb on - strand at 150.241 kb on + strand at 150.258 kb on - strand, within Synpcc7942_0149 at 150.265 kb on + strand, within Synpcc7942_0149 at 150.275 kb on - strand, within Synpcc7942_0149 at 150.330 kb on + strand, within Synpcc7942_0149 at 150.338 kb on - strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.341 kb on + strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.349 kb on - strand, within Synpcc7942_0149 at 150.365 kb on + strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.378 kb on - strand, within Synpcc7942_0149 at 150.392 kb on + strand, within Synpcc7942_0149 at 150.435 kb on + strand, within Synpcc7942_0149 at 150.440 kb on + strand, within Synpcc7942_0149 at 150.464 kb on - strand, within Synpcc7942_0149 at 150.465 kb on + strand, within Synpcc7942_0149 at 150.487 kb on + strand, within Synpcc7942_0149 at 150.649 kb on + strand, within Synpcc7942_0149 at 150.664 kb on - strand, within Synpcc7942_0149 at 150.671 kb on - strand, within Synpcc7942_0149 at 150.679 kb on - strand, within Synpcc7942_0149 at 150.699 kb on + strand at 150.748 kb on + strand at 150.796 kb on - strand at 150.951 kb on + strand, within Synpcc7942_0150 at 151.019 kb on - strand, within Synpcc7942_0150 at 151.039 kb on + strand, within Synpcc7942_0150 at 151.045 kb on - strand, within Synpcc7942_0150 at 151.079 kb on + strand, within Synpcc7942_0150 at 151.135 kb on + strand, within Synpcc7942_0150 at 151.165 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.167 kb on + strand, within Synpcc7942_0150 at 151.175 kb on - strand, within Synpcc7942_0150 at 151.183 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.185 kb on - strand, within Synpcc7942_0150 at 151.219 kb on + strand, within Synpcc7942_0150 at 151.273 kb on + strand, within Synpcc7942_0150 at 151.287 kb on + strand, within Synpcc7942_0150 at 151.323 kb on - strand, within Synpcc7942_0150 at 151.351 kb on + strand, within Synpcc7942_0150 at 151.351 kb on + strand, within Synpcc7942_0150 at 151.359 kb on - strand, within Synpcc7942_0150 at 151.359 kb on - strand, within Synpcc7942_0150 at 151.372 kb on - strand, within Synpcc7942_0150 at 151.373 kb on - strand, within Synpcc7942_0150 at 151.374 kb on + strand, within Synpcc7942_0150 at 151.393 kb on - strand, within Synpcc7942_0150 at 151.420 kb on + strand, within Synpcc7942_0150 at 151.420 kb on + strand, within Synpcc7942_0150 at 151.428 kb on - strand, within Synpcc7942_0150 at 151.428 kb on - strand, within Synpcc7942_0150 at 151.507 kb on - strand, within Synpcc7942_0150 at 151.524 kb on + strand, within Synpcc7942_0150 at 151.556 kb on + strand, within Synpcc7942_0150 at 151.616 kb on + strand, within Synpcc7942_0150 at 151.616 kb on + strand, within Synpcc7942_0150 at 151.624 kb on - strand, within Synpcc7942_0150 at 151.676 kb on - strand, within Synpcc7942_0150 at 151.683 kb on - strand, within Synpcc7942_0150 at 151.701 kb on + strand, within Synpcc7942_0150 at 151.703 kb on - strand, within Synpcc7942_0150 at 151.709 kb on - strand, within Synpcc7942_0150 at 151.721 kb on + strand, within Synpcc7942_0150 at 151.724 kb on - strand, within Synpcc7942_0150 at 151.729 kb on - strand, within Synpcc7942_0150 at 151.787 kb on + strand, within Synpcc7942_0150 at 151.832 kb on - strand at 151.933 kb on + strand at 151.933 kb on + strand at 151.941 kb on - strand at 151.941 kb on - strand at 151.957 kb on + strand at 151.988 kb on + strand at 151.988 kb on + strand at 151.988 kb on + strand at 151.996 kb on - strand at 151.996 kb on - strand at 151.996 kb on - strand at 152.001 kb on - strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.017 kb on + strand at 152.022 kb on + strand at 152.022 kb on + strand at 152.025 kb on - strand at 152.035 kb on - strand at 152.056 kb on + strand at 152.064 kb on - strand at 152.067 kb on - strand at 152.071 kb on + strand at 152.071 kb on + strand at 152.097 kb on + strand at 152.106 kb on - strand at 152.112 kb on - strand at 152.169 kb on - strand at 152.169 kb on - strand at 152.174 kb on - strand at 152.178 kb on + strand at 152.178 kb on + strand at 152.212 kb on + strand at 152.235 kb on + strand at 152.325 kb on + strand at 152.485 kb on - strand at 152.498 kb on + strand at 152.557 kb on + strand at 152.575 kb on - strand at 152.576 kb on + strand at 152.624 kb on + strand at 152.663 kb on - strand at 152.691 kb on - strand at 152.691 kb on - strand at 152.732 kb on + strand at 152.740 kb on - strand at 152.740 kb on - strand at 152.751 kb on - strand at 152.752 kb on - strand at 152.823 kb on + strand, within psfR at 152.850 kb on + strand, within psfR at 152.890 kb on + strand, within psfR at 152.909 kb on - strand, within psfR
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 150,185 - +0.5 150,191 - -0.3 150,214 + +0.0 150,224 - +0.3 150,241 + -0.5 150,258 - Synpcc7942_0149 0.13 -0.0 150,265 + Synpcc7942_0149 0.14 -0.0 150,275 - Synpcc7942_0149 0.16 +0.9 150,330 + Synpcc7942_0149 0.26 +0.6 150,338 - Synpcc7942_0149 0.27 +0.3 150,341 + Synpcc7942_0149 0.28 -0.1 150,341 + Synpcc7942_0149 0.28 -1.2 150,341 + Synpcc7942_0149 0.28 +0.5 150,341 + Synpcc7942_0149 0.28 +0.1 150,341 + Synpcc7942_0149 0.28 +0.7 150,341 + Synpcc7942_0149 0.28 +1.2 150,349 - Synpcc7942_0149 0.29 +0.0 150,349 - Synpcc7942_0149 0.29 -0.9 150,349 - Synpcc7942_0149 0.29 +1.8 150,349 - Synpcc7942_0149 0.29 +0.3 150,349 - Synpcc7942_0149 0.29 -0.1 150,349 - Synpcc7942_0149 0.29 +0.2 150,349 - Synpcc7942_0149 0.29 -0.3 150,349 - Synpcc7942_0149 0.29 +0.4 150,349 - Synpcc7942_0149 0.29 -0.3 150,349 - Synpcc7942_0149 0.29 -0.1 150,349 - Synpcc7942_0149 0.29 -0.3 150,365 + Synpcc7942_0149 0.32 +0.5 150,378 - Synpcc7942_0149 0.34 -0.4 150,378 - Synpcc7942_0149 0.34 -0.0 150,392 + Synpcc7942_0149 0.37 +1.4 150,435 + Synpcc7942_0149 0.44 +0.0 150,440 + Synpcc7942_0149 0.45 -1.4 150,464 - Synpcc7942_0149 0.50 +0.4 150,465 + Synpcc7942_0149 0.50 +0.0 150,487 + Synpcc7942_0149 0.54 +0.6 150,649 + Synpcc7942_0149 0.83 +0.5 150,664 - Synpcc7942_0149 0.85 +0.0 150,671 - Synpcc7942_0149 0.87 -0.3 150,679 - Synpcc7942_0149 0.88 -0.3 150,699 + -0.3 150,748 + -1.4 150,796 - -2.0 150,951 + Synpcc7942_0150 0.17 -2.9 151,019 - Synpcc7942_0150 0.23 -2.6 151,039 + Synpcc7942_0150 0.25 -1.1 151,045 - Synpcc7942_0150 0.25 -1.5 151,079 + Synpcc7942_0150 0.28 -2.7 151,135 + Synpcc7942_0150 0.33 -1.7 151,165 + Synpcc7942_0150 0.35 -3.7 151,167 + Synpcc7942_0150 0.36 -2.9 151,167 + Synpcc7942_0150 0.36 -4.3 151,167 + Synpcc7942_0150 0.36 -3.3 151,175 - Synpcc7942_0150 0.36 -3.7 151,183 - Synpcc7942_0150 0.37 -3.1 151,185 - Synpcc7942_0150 0.37 -3.7 151,185 - Synpcc7942_0150 0.37 -2.7 151,185 - Synpcc7942_0150 0.37 -2.0 151,219 + Synpcc7942_0150 0.40 -2.9 151,273 + Synpcc7942_0150 0.45 -4.4 151,287 + Synpcc7942_0150 0.46 -3.0 151,323 - Synpcc7942_0150 0.49 -2.9 151,351 + Synpcc7942_0150 0.51 -3.9 151,351 + Synpcc7942_0150 0.51 -1.4 151,359 - Synpcc7942_0150 0.52 -1.5 151,359 - Synpcc7942_0150 0.52 -3.5 151,372 - Synpcc7942_0150 0.53 +0.1 151,373 - Synpcc7942_0150 0.53 -2.1 151,374 + Synpcc7942_0150 0.53 -1.0 151,393 - Synpcc7942_0150 0.55 -3.1 151,420 + Synpcc7942_0150 0.57 -2.3 151,420 + Synpcc7942_0150 0.57 -0.3 151,428 - Synpcc7942_0150 0.58 -2.1 151,428 - Synpcc7942_0150 0.58 -3.9 151,507 - Synpcc7942_0150 0.65 -3.2 151,524 + Synpcc7942_0150 0.66 -3.1 151,556 + Synpcc7942_0150 0.69 -3.4 151,616 + Synpcc7942_0150 0.74 -1.6 151,616 + Synpcc7942_0150 0.74 -1.7 151,624 - Synpcc7942_0150 0.75 -2.9 151,676 - Synpcc7942_0150 0.79 -2.4 151,683 - Synpcc7942_0150 0.80 -2.7 151,701 + Synpcc7942_0150 0.81 -2.2 151,703 - Synpcc7942_0150 0.81 -3.6 151,709 - Synpcc7942_0150 0.82 -2.9 151,721 + Synpcc7942_0150 0.83 -1.1 151,724 - Synpcc7942_0150 0.83 -0.7 151,729 - Synpcc7942_0150 0.84 -3.5 151,787 + Synpcc7942_0150 0.89 -2.0 151,832 - -2.8 151,933 + -0.1 151,933 + -1.7 151,941 - -1.5 151,941 - -1.5 151,957 + -0.1 151,988 + +0.1 151,988 + -0.1 151,988 + -1.5 151,996 - -1.0 151,996 - +1.4 151,996 - -0.0 152,001 - -0.5 152,017 + -0.9 152,017 + +0.1 152,017 + -0.0 152,017 + -0.1 152,017 + -0.3 152,022 + +0.2 152,022 + -0.3 152,025 - -0.3 152,035 - +1.5 152,056 + -0.2 152,064 - -0.8 152,067 - -0.3 152,071 + +0.3 152,071 + +0.6 152,097 + -0.1 152,106 - -0.7 152,112 - -1.5 152,169 - -0.8 152,169 - -0.1 152,174 - +1.2 152,178 + +0.1 152,178 + -0.0 152,212 + -1.0 152,235 + +1.4 152,325 + -0.4 152,485 - -0.3 152,498 + -0.4 152,557 + +0.7 152,575 - +0.7 152,576 + +0.7 152,624 + -0.3 152,663 - -0.6 152,691 - -0.8 152,691 - +0.3 152,732 + -0.1 152,740 - +0.4 152,740 - -0.0 152,751 - +0.7 152,752 - -0.0 152,823 + psfR Synpcc7942_0151 0.12 +0.8 152,850 + psfR Synpcc7942_0151 0.14 -0.6 152,890 + psfR Synpcc7942_0151 0.15 -0.6 152,909 - psfR Synpcc7942_0151 0.16 -0.7
Or see this region's nucleotide sequence