Experiment: BG11 with Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt envM and ntcA are separated by 231 nucleotides ntcA and Synpcc7942_0128 are separated by 92 nucleotides Synpcc7942_0128 and Synpcc7942_0129 overlap by 4 nucleotides Synpcc7942_0129 and Synpcc7942_0130 overlap by 56 nucleotides
Synpcc7942_0126: envM - enoyl-(acyl carrier protein) reductase, at 125,382 to 126,158
envM
Synpcc7942_0127: ntcA - transcriptional regulator, Crp/Fnr family, at 126,390 to 127,058
ntcA
Synpcc7942_0128: Synpcc7942_0128 - hypothetical protein, at 127,151 to 128,449
_0128
Synpcc7942_0129: Synpcc7942_0129 - Resolvase, RNase H-like fold, at 128,446 to 128,877
_0129
Synpcc7942_0130: Synpcc7942_0130 - hypothetical protein, at 128,822 to 129,409
_0130
Position (kb)
127
128
129 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 126.259 kb on + strand at 126.267 kb on - strand at 126.329 kb on + strand at 126.334 kb on + strand at 126.342 kb on - strand at 126.362 kb on - strand at 126.369 kb on + strand at 126.369 kb on + strand at 126.369 kb on + strand at 126.371 kb on + strand at 126.377 kb on - strand at 127.053 kb on + strand at 127.061 kb on - strand at 127.093 kb on - strand at 127.116 kb on + strand at 127.116 kb on + strand at 127.116 kb on - strand at 127.118 kb on + strand at 127.123 kb on + strand at 127.123 kb on + strand at 127.131 kb on - strand at 127.131 kb on - strand at 127.131 kb on - strand at 127.131 kb on - strand at 127.171 kb on + strand at 127.276 kb on + strand at 127.278 kb on - strand at 127.355 kb on + strand, within Synpcc7942_0128 at 127.423 kb on + strand, within Synpcc7942_0128 at 127.423 kb on + strand, within Synpcc7942_0128 at 127.528 kb on - strand, within Synpcc7942_0128 at 127.642 kb on - strand, within Synpcc7942_0128 at 127.674 kb on + strand, within Synpcc7942_0128 at 127.692 kb on - strand, within Synpcc7942_0128 at 127.718 kb on + strand, within Synpcc7942_0128 at 127.745 kb on + strand, within Synpcc7942_0128 at 127.819 kb on + strand, within Synpcc7942_0128 at 127.847 kb on + strand, within Synpcc7942_0128 at 127.850 kb on - strand, within Synpcc7942_0128 at 127.888 kb on - strand, within Synpcc7942_0128 at 127.888 kb on - strand, within Synpcc7942_0128 at 127.898 kb on - strand, within Synpcc7942_0128 at 127.930 kb on - strand, within Synpcc7942_0128 at 127.959 kb on + strand, within Synpcc7942_0128 at 128.021 kb on + strand, within Synpcc7942_0128 at 128.171 kb on - strand, within Synpcc7942_0128 at 128.192 kb on - strand, within Synpcc7942_0128 at 128.213 kb on - strand, within Synpcc7942_0128 at 128.219 kb on - strand, within Synpcc7942_0128 at 128.221 kb on + strand, within Synpcc7942_0128 at 128.267 kb on + strand at 128.310 kb on + strand, within Synpcc7942_0128 at 128.326 kb on - strand at 128.381 kb on + strand at 128.429 kb on - strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.453 kb on + strand at 128.461 kb on - strand at 128.471 kb on - strand at 128.482 kb on - strand at 128.611 kb on + strand, within Synpcc7942_0129 at 128.653 kb on + strand, within Synpcc7942_0129 at 128.659 kb on + strand, within Synpcc7942_0129 at 128.670 kb on + strand, within Synpcc7942_0129 at 128.711 kb on - strand, within Synpcc7942_0129 at 128.722 kb on - strand, within Synpcc7942_0129 at 128.750 kb on - strand, within Synpcc7942_0129 at 128.784 kb on - strand, within Synpcc7942_0129 at 128.843 kb on + strand at 128.907 kb on + strand, within Synpcc7942_0130 at 128.915 kb on - strand, within Synpcc7942_0130 at 128.920 kb on - strand, within Synpcc7942_0130 at 128.941 kb on - strand, within Synpcc7942_0130 at 128.977 kb on - strand, within Synpcc7942_0130 at 129.018 kb on - strand, within Synpcc7942_0130 at 129.031 kb on + strand, within Synpcc7942_0130 at 129.033 kb on + strand, within Synpcc7942_0130 at 129.051 kb on - strand, within Synpcc7942_0130 at 129.102 kb on + strand, within Synpcc7942_0130 at 129.122 kb on - strand, within Synpcc7942_0130 at 129.210 kb on - strand, within Synpcc7942_0130 at 129.224 kb on + strand, within Synpcc7942_0130 at 129.229 kb on + strand, within Synpcc7942_0130 at 129.231 kb on - strand, within Synpcc7942_0130 at 129.243 kb on + strand, within Synpcc7942_0130 at 129.251 kb on - strand, within Synpcc7942_0130 at 129.252 kb on + strand, within Synpcc7942_0130 at 129.323 kb on - strand, within Synpcc7942_0130 at 129.330 kb on - strand, within Synpcc7942_0130 at 129.332 kb on + strand, within Synpcc7942_0130 at 129.369 kb on - strand at 129.404 kb on + strand at 129.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.05 mg/ml remove 126,259 + -1.6 126,267 - -2.2 126,329 + +0.1 126,334 + -2.3 126,342 - -0.3 126,362 - +0.2 126,369 + +0.1 126,369 + -1.1 126,369 + -0.9 126,371 + +0.1 126,377 - +0.4 127,053 + +0.0 127,061 - +0.5 127,093 - +0.5 127,116 + -0.5 127,116 + -1.6 127,116 - -1.2 127,118 + -0.9 127,123 + -0.6 127,123 + +0.1 127,131 - -0.0 127,131 - -0.3 127,131 - -3.5 127,131 - -2.1 127,171 + -2.2 127,276 + -3.0 127,278 - -2.5 127,355 + Synpcc7942_0128 0.16 -2.3 127,423 + Synpcc7942_0128 0.21 -0.4 127,423 + Synpcc7942_0128 0.21 -3.5 127,528 - Synpcc7942_0128 0.29 -3.3 127,642 - Synpcc7942_0128 0.38 -2.8 127,674 + Synpcc7942_0128 0.40 -2.5 127,692 - Synpcc7942_0128 0.42 -1.7 127,718 + Synpcc7942_0128 0.44 -2.2 127,745 + Synpcc7942_0128 0.46 -1.7 127,819 + Synpcc7942_0128 0.51 -1.7 127,847 + Synpcc7942_0128 0.54 -3.3 127,850 - Synpcc7942_0128 0.54 -1.9 127,888 - Synpcc7942_0128 0.57 -1.4 127,888 - Synpcc7942_0128 0.57 -2.3 127,898 - Synpcc7942_0128 0.58 -0.5 127,930 - Synpcc7942_0128 0.60 -4.4 127,959 + Synpcc7942_0128 0.62 -1.7 128,021 + Synpcc7942_0128 0.67 -2.5 128,171 - Synpcc7942_0128 0.79 -4.5 128,192 - Synpcc7942_0128 0.80 -3.0 128,213 - Synpcc7942_0128 0.82 -1.5 128,219 - Synpcc7942_0128 0.82 -3.5 128,221 + Synpcc7942_0128 0.82 -3.5 128,267 + -1.1 128,310 + Synpcc7942_0128 0.89 -2.7 128,326 - -2.8 128,381 + -1.7 128,429 - -1.9 128,443 + +0.5 128,443 + +2.5 128,443 + -0.6 128,443 + -0.2 128,443 + +0.2 128,451 - -0.4 128,451 - -0.1 128,451 - -2.1 128,451 - +1.3 128,453 + -1.2 128,461 - -0.5 128,471 - -0.5 128,482 - -1.6 128,611 + Synpcc7942_0129 0.38 -2.9 128,653 + Synpcc7942_0129 0.48 -1.4 128,659 + Synpcc7942_0129 0.49 -2.6 128,670 + Synpcc7942_0129 0.52 -3.3 128,711 - Synpcc7942_0129 0.61 -2.5 128,722 - Synpcc7942_0129 0.64 -3.7 128,750 - Synpcc7942_0129 0.70 -2.3 128,784 - Synpcc7942_0129 0.78 -2.3 128,843 + +0.1 128,907 + Synpcc7942_0130 0.14 +0.1 128,915 - Synpcc7942_0130 0.16 +2.7 128,920 - Synpcc7942_0130 0.17 +0.3 128,941 - Synpcc7942_0130 0.20 -1.8 128,977 - Synpcc7942_0130 0.26 -2.9 129,018 - Synpcc7942_0130 0.33 +0.2 129,031 + Synpcc7942_0130 0.36 -0.1 129,033 + Synpcc7942_0130 0.36 +0.6 129,051 - Synpcc7942_0130 0.39 +0.3 129,102 + Synpcc7942_0130 0.48 -2.0 129,122 - Synpcc7942_0130 0.51 -1.4 129,210 - Synpcc7942_0130 0.66 -0.7 129,224 + Synpcc7942_0130 0.68 -0.1 129,229 + Synpcc7942_0130 0.69 -1.1 129,231 - Synpcc7942_0130 0.70 -1.8 129,243 + Synpcc7942_0130 0.72 -0.2 129,251 - Synpcc7942_0130 0.73 +0.5 129,252 + Synpcc7942_0130 0.73 -0.3 129,323 - Synpcc7942_0130 0.85 +0.3 129,330 - Synpcc7942_0130 0.86 +0.3 129,332 + Synpcc7942_0130 0.87 +0.1 129,369 - -1.5 129,404 + -0.9 129,424 - +0.5
Or see this region's nucleotide sequence