Strain Fitness in Pseudomonas fluorescens SBW25-INTG

Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22280

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs
				remove
5,009,586	+			+1.4
5,009,586	+			-2.8
5,009,586	+			+0.1
5,009,586	+			+0.4
5,009,586	+			+1.0
5,009,586	+			-0.3
5,009,586	+			+1.7
5,009,586	+			+1.2
5,009,586	+			-1.5
5,009,586	+			+0.0
5,009,586	+			+1.4
5,009,587	-			-2.6
5,009,587	-			+0.7
5,009,587	-			-0.7
5,009,587	-			+0.2
5,009,587	-			+0.8
5,009,587	-			-2.7
5,009,587	-			+1.3
5,009,587	-			+0.4
5,009,587	-			-1.5
5,009,587	-			+0.4
5,009,587	-			-0.3
5,009,587	-			-2.6
5,009,587	-			+0.7
5,009,587	-			-0.3
5,009,639	+			+0.3
5,009,639	+			-2.5
5,009,639	+			+0.9
5,009,639	+			+0.0
5,009,639	+			+0.9
5,009,639	+			+1.2
5,009,639	+			+0.8
5,009,639	+			-3.6
5,009,639	+			-0.1
5,009,639	+			-0.9
5,009,639	+			-2.8
5,009,639	+			+0.0
5,009,639	+			+0.7
5,009,639	+			-1.9
5,009,639	+			+0.2
5,009,639	+			-1.1
5,009,639	+			+0.0
5,009,639	+			+0.4
5,009,639	+			-1.6
5,009,639	+			-1.1
5,009,639	+			-0.1
5,009,639	+			+0.8
5,009,639	+			+0.1
5,009,639	+			-1.9
5,009,639	+			-0.2
5,009,639	+			-0.2
5,009,639	+			-0.7
5,009,639	+			+0.1
5,009,639	+			-0.5
5,009,639	+			+1.0
5,009,639	+			-0.6
5,009,639	+			-0.1
5,009,639	+			-2.7
5,009,639	+			-0.7
5,009,639	+			-2.1
5,009,639	+			-0.2
5,009,639	+			-0.1
5,009,639	+			-1.4
5,009,639	+			+0.1
5,009,639	+			+0.4
5,009,639	+			+1.1
5,009,639	+			-2.3
5,009,639	+			-0.6
5,009,640	-			+0.7
5,009,640	-			-2.0
5,009,640	-			+0.4
5,009,640	-			+0.7
5,009,640	-			-2.4
5,009,640	-			+0.7
5,009,640	-			+0.7
5,009,640	-			-0.8
5,009,640	-			+0.1
5,009,640	-			+0.0
5,009,640	-			-0.4
5,009,640	-			-0.2
5,009,640	-			-1.8
5,009,640	-			-0.8
5,009,640	-			-1.5
5,009,640	-			+0.7
5,009,640	-			+0.6
5,009,640	-			-1.3
5,009,640	-			-3.8
5,009,640	-			-0.2
5,009,640	-			+0.0
5,009,640	-			-0.1
5,009,640	-			-0.0
5,009,640	-			-0.2
5,009,640	-			+1.2
5,009,640	-			+0.1
5,009,640	-			-1.8
5,009,640	-			+0.1
5,009,640	-			+0.0
5,009,640	-			+0.3
5,009,640	-			-1.6
5,009,640	-			+0.0
5,009,640	-			+1.7
5,009,640	-			-1.5
5,009,640	-			-0.3
5,009,640	-			+1.8
5,009,674	+			+1.3
5,009,674	+			+1.2
5,009,674	+			-1.7
5,009,674	+			+0.9
5,009,674	+			+0.8
5,009,674	+			-0.1
5,009,674	+			+1.1
5,009,674	+			-0.1
5,009,674	+			-1.9
5,009,674	+			-1.1
5,009,674	+			-2.6
5,009,674	+			-1.6
5,009,675	-			-0.2
5,009,675	-			-1.0
5,009,675	-			-1.7
5,009,675	-			-0.1
5,009,675	-			-0.1
5,009,675	-			-2.0
5,009,675	-			-1.0
5,009,675	-			+0.1
5,009,675	-			+0.4
5,009,675	-			-1.4
5,009,675	-			+0.4
5,009,675	-			+1.8
5,009,675	-			+1.2
5,009,675	-			-0.9
5,009,675	-			-0.3
5,009,675	-			-0.2
5,009,676	+			-0.1
5,009,677	-			-0.8
5,009,705	-			-0.6
5,009,783	+			+0.4
5,009,783	+			-2.4
5,009,783	+			+1.5
5,009,783	+			+1.4
5,009,784	-			-0.1
5,009,784	-			-0.3
5,009,784	-			+1.9
5,009,784	-			+0.5
5,009,784	-			+0.3
5,009,784	-			-0.5
5,009,784	-			+0.2
5,009,832	+			+0.1
5,009,832	+			-0.8
5,009,832	+			-0.4
5,009,832	+			-0.0
5,009,832	+			+0.5
5,009,832	+			+0.4
5,009,832	+			-1.6
5,009,832	+			+0.2
5,009,832	+			-0.3
5,009,832	+			-0.9
5,009,833	-			+0.0
5,009,833	-			+0.4
5,009,833	-			+1.7
5,009,833	-			-1.4
5,009,833	-			-1.7
5,009,833	-			-1.5
5,009,833	-			-2.8
5,009,833	-			-1.1
5,009,833	-			-0.3
5,009,833	-			-0.8
5,009,833	-			+1.0
5,009,883	+			+0.5
5,009,883	+			+0.1
5,009,883	+			-1.4
5,009,883	+			-0.1
5,009,884	-			-2.0
5,009,884	-			+0.4
5,009,884	-			-0.8
5,009,884	-			+0.6
5,009,884	-			-0.5
5,009,884	-			-0.2
5,009,884	-			-0.2
5,009,884	-			+0.2
5,009,891	+			-0.7
5,009,892	-			-1.1
5,009,892	-			+1.1
5,009,892	-			+1.0
5,009,904	+	PFLU_RS22270	0.12	-1.3
5,009,904	+	PFLU_RS22270	0.12	-1.1
5,009,904	+	PFLU_RS22270	0.12	+0.9
5,009,904	+	PFLU_RS22270	0.12	+0.4
5,009,904	+	PFLU_RS22270	0.12	+0.2
5,009,904	+	PFLU_RS22270	0.12	+2.1
5,009,904	+	PFLU_RS22270	0.12	-0.2
5,009,905	-	PFLU_RS22270	0.12	+0.9
5,009,905	-	PFLU_RS22270	0.12	+0.4
5,009,905	-	PFLU_RS22270	0.12	+0.7
5,009,905	-	PFLU_RS22270	0.12	+0.3
5,009,905	-	PFLU_RS22270	0.12	-0.5
5,009,905	-	PFLU_RS22270	0.12	+0.2
5,009,915	+	PFLU_RS22270	0.13	+0.1
5,009,915	+	PFLU_RS22270	0.13	-0.1
5,009,915	+	PFLU_RS22270	0.13	-0.2
5,009,916	-	PFLU_RS22270	0.13	+0.1
5,009,916	-	PFLU_RS22270	0.13	+0.1
5,009,916	-	PFLU_RS22270	0.13	+0.5
5,009,916	-	PFLU_RS22270	0.13	-0.8
5,009,976	+	PFLU_RS22270	0.23	-0.1
5,009,976	+	PFLU_RS22270	0.23	-0.4
5,009,977	-	PFLU_RS22270	0.23	-1.5
5,009,977	-	PFLU_RS22270	0.23	-0.1
5,009,977	-	PFLU_RS22270	0.23	-1.0
5,010,070	+	PFLU_RS22270	0.37	-0.3
5,010,070	+	PFLU_RS22270	0.37	-0.7
5,010,070	+	PFLU_RS22270	0.37	-0.3
5,010,071	-	PFLU_RS22270	0.37	-1.6
5,010,071	-	PFLU_RS22270	0.37	-1.6
5,010,071	-	PFLU_RS22270	0.37	+0.8
5,010,145	+	PFLU_RS22270	0.49	+0.3
5,010,145	+	PFLU_RS22270	0.49	-1.5
5,010,146	-	PFLU_RS22270	0.49	-0.3
5,010,146	-	PFLU_RS22270	0.49	+0.0
5,010,146	-	PFLU_RS22270	0.49	-0.1
5,010,146	-	PFLU_RS22270	0.49	-0.1
5,010,146	-	PFLU_RS22270	0.49	-1.0
5,010,146	-	PFLU_RS22270	0.49	+0.2
5,010,196	+	PFLU_RS22270	0.56	+0.9
5,010,196	+	PFLU_RS22270	0.56	-1.5
5,010,196	+	PFLU_RS22270	0.56	-0.8
5,010,196	+	PFLU_RS22270	0.56	-0.6
5,010,197	-	PFLU_RS22270	0.57	-0.6
5,010,197	-	PFLU_RS22270	0.57	-0.1
5,010,197	-	PFLU_RS22270	0.57	+1.7
5,010,197	-	PFLU_RS22270	0.57	-0.4
5,010,352	+	PFLU_RS22270	0.80	-0.0
5,010,353	-	PFLU_RS22270	0.80	-0.1
5,010,353	-	PFLU_RS22270	0.80	+0.5
5,010,353	-	PFLU_RS22270	0.80	-1.3
5,010,392	+	PFLU_RS22270	0.86	+0.2
5,010,392	+	PFLU_RS22270	0.86	+0.3
5,010,393	-	PFLU_RS22270	0.87	+0.6
5,010,393	-	PFLU_RS22270	0.87	+0.0
5,010,393	-	PFLU_RS22270	0.87	+0.5
5,010,393	-	PFLU_RS22270	0.87	+3.9
5,010,393	-	PFLU_RS22270	0.87	+0.1
5,010,396	+	PFLU_RS22270	0.87	+1.5
5,010,396	+	PFLU_RS22270	0.87	-0.6
5,010,396	+	PFLU_RS22270	0.87	+0.6
5,010,396	+	PFLU_RS22270	0.87	-0.1
5,010,396	+	PFLU_RS22270	0.87	-0.2
5,010,396	+	PFLU_RS22270	0.87	-2.1
5,010,396	+	PFLU_RS22270	0.87	+1.3
5,010,396	+	PFLU_RS22270	0.87	-1.0
5,010,396	+	PFLU_RS22270	0.87	+0.3
5,010,396	+	PFLU_RS22270	0.87	-0.0
5,010,396	+	PFLU_RS22270	0.87	+0.0
5,010,396	+	PFLU_RS22270	0.87	-0.7
5,010,396	+	PFLU_RS22270	0.87	-1.6
5,010,397	-	PFLU_RS22270	0.87	+0.3
5,010,397	-	PFLU_RS22270	0.87	-0.8
5,010,397	-	PFLU_RS22270	0.87	+0.1
5,010,397	-	PFLU_RS22270	0.87	+1.2
5,010,397	-	PFLU_RS22270	0.87	+1.7
5,010,397	-	PFLU_RS22270	0.87	+0.3
5,010,397	-	PFLU_RS22270	0.87	+0.9
5,010,397	-	PFLU_RS22270	0.87	-0.6
5,010,397	-	PFLU_RS22270	0.87	-1.7
5,010,397	-	PFLU_RS22270	0.87	-1.6
5,010,397	-	PFLU_RS22270	0.87	-0.6
5,010,397	-	PFLU_RS22270	0.87	-0.6
5,010,397	-	PFLU_RS22270	0.87	-1.6
5,010,433	+			+0.2
5,010,433	+			+0.7
5,010,434	-			-2.8
5,010,434	-			-1.0
5,010,434	-			+0.1
5,010,441	+			+1.2
5,010,441	+			-1.9
5,010,441	+			+1.2
5,010,441	+			+0.0
5,010,441	+			+1.2
5,010,441	+			-1.4
5,010,442	-			-0.0
5,010,442	-			+1.7
5,010,442	-			-1.2
5,010,562	-			+0.2
5,010,562	-			-0.7
5,010,562	-			-0.8
5,010,577	+			+0.3
5,010,596	-			-0.3
5,010,960	+	PFLU_RS22280	0.37	-0.3
5,010,960	+	PFLU_RS22280	0.37	+0.4
5,010,960	+	PFLU_RS22280	0.37	-0.9
5,010,961	-	PFLU_RS22280	0.37	+0.4
5,010,961	-	PFLU_RS22280	0.37	-0.1
5,010,961	-	PFLU_RS22280	0.37	-1.6
5,010,961	-	PFLU_RS22280	0.37	+1.1
5,011,108	+	PFLU_RS22280	0.49	-0.9
5,011,108	+	PFLU_RS22280	0.49	-0.5
5,011,120	+	PFLU_RS22280	0.50	+0.2
5,011,120	+	PFLU_RS22280	0.50	-0.3
5,011,120	+	PFLU_RS22280	0.50	+1.2
5,011,121	-	PFLU_RS22280	0.50	-2.4
5,011,121	-	PFLU_RS22280	0.50	-0.4
5,011,121	-	PFLU_RS22280	0.50	-2.6
5,011,456	+	PFLU_RS22280	0.77	+0.8
5,011,457	-	PFLU_RS22280	0.77	+1.2
5,011,457	-	PFLU_RS22280	0.77	-0.1
5,011,624	+			+0.1
5,011,624	+			-1.8
5,011,625	-			+1.3
5,011,625	-			-0.7
5,011,625	-			-0.6
5,011,685	+			-0.4
5,011,685	+			-1.5
5,011,685	+			-0.2
5,011,686	-			-0.4
5,011,686	-			+0.2
5,011,722	+			-1.8
5,011,722	+			-0.1
5,011,722	+			-0.7
5,011,722	+			+0.2
5,011,722	+			-1.1
5,011,722	+			+0.6
5,011,722	+			+1.9
5,011,722	+			+0.2
5,011,722	+			-1.2
5,011,722	+			+0.6
5,011,722	+			-1.5
5,011,723	-			-1.4
5,011,723	-			+0.3
5,011,723	-			+0.5
5,011,723	-			-0.6
5,011,723	-			-2.0
5,011,723	-			-0.2
5,011,723	-			+0.2
5,011,723	-			+2.4
5,011,723	-			-1.3
5,011,723	-			-2.1
5,011,723	-			-1.8
5,011,723	-			-1.4
5,011,723	-			+0.9
5,011,723	-			-1.1
5,011,763	+			-0.3
5,011,764	-			+0.5
5,011,764	-			-0.8
5,011,764	-			+0.1
5,011,776	+			-0.1
5,011,776	+			+0.4
5,011,776	+			-3.6
5,011,776	+			-0.6
5,011,776	+			+0.4
5,011,776	+			+1.5
5,011,776	+			+1.4
5,011,777	-			-1.3
5,011,777	-			+0.2
5,011,777	-			+0.3
5,011,777	-			-1.9
5,011,777	-			-2.1
5,011,777	-			-0.3
5,011,777	-			-0.6
5,011,784	+			-0.3
5,011,784	+			+0.1
5,011,785	-			-2.3
5,011,804	+			+0.3
5,011,879	+			+2.1
5,011,879	+			+0.1
5,011,879	+			+0.2
5,011,879	+			+0.2
5,011,879	+			-0.9
5,011,879	+			+1.4
5,011,879	+			-1.5
5,011,880	-			-0.2
5,011,880	-			-1.0
5,011,880	-			-1.6
5,011,880	-			-1.1
5,011,880	-			-1.0
5,011,911	+			-0.8
5,011,912	-			-1.1
5,011,912	-			-0.0
5,011,912	-			-0.6
5,011,925	-			-1.1
5,011,935	+			-1.0
5,011,935	+			-0.3
5,011,935	+			+0.5
5,011,935	+			+1.1
5,011,935	+			-0.9
5,011,935	+			+0.8
5,011,936	-			+1.4
5,011,936	-			-1.1
5,011,978	+			-0.6
5,011,978	+			+0.7
5,011,979	-			+0.2
5,011,979	-			-0.4
5,011,979	-			-1.2
5,011,979	-			-1.1
5,012,035	+			+0.2
5,012,036	-			-1.4
5,012,036	-			-0.3
5,012,053	+			-0.6
5,012,053	+			+1.7
5,012,053	+			+0.3
5,012,054	-			-0.8
5,012,054	-			-0.7
5,012,055	+			-0.6
5,012,055	+			-1.9
5,012,055	+			-0.3
5,012,055	+			-0.3
5,012,055	+			-0.1
5,012,055	+			+0.8
5,012,056	-			-0.4
5,012,056	-			-0.6
5,012,056	-			+0.1
5,012,056	-			+0.7
5,012,056	-			+1.0
5,012,056	-			+0.1
5,012,056	-			-0.8
5,012,056	-			-1.9
5,012,056	-			-1.2
5,012,056	-			+0.2
5,012,148	-			+1.0
5,012,188	+			+1.7
5,012,188	+			+0.9
5,012,188	+			-1.4
5,012,189	-			+0.3
5,012,189	-			+0.3
5,012,189	-			+0.5
5,012,191	+			-0.6
5,012,191	+			-1.0
5,012,191	+			+0.4
5,012,191	+			-2.0
5,012,191	+			-1.0
5,012,191	+			-0.6
5,012,191	+			-1.2
5,012,192	-			+0.9
5,012,192	-			+0.3
5,012,192	-			-0.5
5,012,192	-			-0.4
5,012,200	+			+0.2
5,012,219	+			-1.2
5,012,219	+			+0.3
5,012,219	+			-0.8
5,012,219	+			-0.5
5,012,229	+			-0.4
5,012,229	+			-0.9
5,012,229	+			+1.1
5,012,230	-			-0.1
5,012,230	-			-2.8
5,012,241	-			+0.2
5,012,241	-			-2.0
5,012,241	-			+1.0
5,012,241	-			+0.1
5,012,248	+			-2.8
5,012,287	-			-0.4
5,012,410	-	PFLU_RS22285	0.29	+2.1
5,012,410	-	PFLU_RS22285	0.29	-0.6
5,012,523	+	PFLU_RS22285	0.49	-0.5
5,012,523	+	PFLU_RS22285	0.49	-0.2
5,012,523	+	PFLU_RS22285	0.49	-0.1
5,012,523	+	PFLU_RS22285	0.49	-0.3
5,012,523	+	PFLU_RS22285	0.49	+1.5
5,012,523	+	PFLU_RS22285	0.49	+0.5
5,012,524	-	PFLU_RS22285	0.49	-0.8
5,012,524	-	PFLU_RS22285	0.49	-1.8
5,012,524	-	PFLU_RS22285	0.49	-1.8
5,012,524	-	PFLU_RS22285	0.49	+0.5
5,012,524	-	PFLU_RS22285	0.49	-1.1
5,012,534	+	PFLU_RS22285	0.51	+0.9
5,012,614	-	PFLU_RS22285	0.65	-0.1
5,012,667	+	PFLU_RS22285	0.74	-1.1
5,012,667	+	PFLU_RS22285	0.74	+0.0
5,012,667	+	PFLU_RS22285	0.74	-0.1
5,012,668	-	PFLU_RS22285	0.74	+1.1
5,012,668	-	PFLU_RS22285	0.74	-0.0
5,012,686	+	PFLU_RS22285	0.77	-1.8
5,012,686	+	PFLU_RS22285	0.77	-0.3
5,012,686	+	PFLU_RS22285	0.77	-0.9
5,012,686	+	PFLU_RS22285	0.77	+0.7
5,012,686	+	PFLU_RS22285	0.77	+0.8
5,012,686	+	PFLU_RS22285	0.77	-0.6
5,012,686	+	PFLU_RS22285	0.77	+0.8
5,012,686	+	PFLU_RS22285	0.77	-3.3
5,012,686	+	PFLU_RS22285	0.77	-3.2
5,012,686	+	PFLU_RS22285	0.77	+0.1
5,012,686	+	PFLU_RS22285	0.77	-0.2
5,012,686	+	PFLU_RS22285	0.77	+0.8
5,012,687	-	PFLU_RS22285	0.77	-0.0
5,012,687	-	PFLU_RS22285	0.77	+1.5
5,012,687	-	PFLU_RS22285	0.77	+0.7
5,012,687	-	PFLU_RS22285	0.77	-1.9
5,012,687	-	PFLU_RS22285	0.77	+0.4
5,012,687	-	PFLU_RS22285	0.77	+0.5
5,012,687	-	PFLU_RS22285	0.77	-0.1
5,012,687	-	PFLU_RS22285	0.77	-1.9
5,012,687	-	PFLU_RS22285	0.77	+0.7
5,012,687	-	PFLU_RS22285	0.77	-0.8
5,012,687	-	PFLU_RS22285	0.77	-0.5
5,012,687	-	PFLU_RS22285	0.77	+0.9
5,012,687	-	PFLU_RS22285	0.77	-1.4
5,012,708	+	PFLU_RS22285	0.81	+0.7
5,012,708	+	PFLU_RS22285	0.81	+0.3
5,012,708	+	PFLU_RS22285	0.81	-1.4
5,012,708	+	PFLU_RS22285	0.81	+1.3
5,012,708	+	PFLU_RS22285	0.81	-2.3
5,012,709	-	PFLU_RS22285	0.81	-0.1
5,012,709	-	PFLU_RS22285	0.81	-0.8
5,012,709	-	PFLU_RS22285	0.81	+1.1
5,012,709	-	PFLU_RS22285	0.81	+1.2
5,012,734	+	PFLU_RS22285	0.86	-0.3
5,012,734	+	PFLU_RS22285	0.86	-0.2
5,012,734	+	PFLU_RS22285	0.86	+0.2
5,012,735	-	PFLU_RS22285	0.86	+0.1
5,012,735	-	PFLU_RS22285	0.86	+1.8
5,012,735	-	PFLU_RS22285	0.86	+0.7
5,012,735	-	PFLU_RS22285	0.86	-1.0
5,012,735	-	PFLU_RS22285	0.86	+0.1

Or see this region's nucleotide sequence