Strain Fitness in Pantoea sp. MT58 around IAI47_00165

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00155 and IAI47_00160 are separated by 111 nucleotidesIAI47_00160 and IAI47_00165 overlap by 1 nucleotidesIAI47_00165 and IAI47_00170 are separated by 298 nucleotides IAI47_00155: IAI47_00155 - hypothetical protein, at 32,145 to 32,825 _00155 IAI47_00160: IAI47_00160 - primosomal protein DnaT, at 32,937 to 33,473 _00160 IAI47_00165: IAI47_00165 - DNA replication protein DnaC, at 33,473 to 34,213 _00165 IAI47_00170: IAI47_00170 - ROK family protein, at 34,512 to 35,645 _00170 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.578 kb on + strand, within IAI47_00155at 32.578 kb on + strand, within IAI47_00155at 32.579 kb on - strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.697 kb on + strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.727 kb on + strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.860 kb on + strandat 32.861 kb on - strandat 32.869 kb on + strandat 32.869 kb on - strandat 32.870 kb on - strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 34.211 kb on + strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.357 kb on - strandat 34.375 kb on + strandat 34.375 kb on + strandat 34.376 kb on - strandat 34.376 kb on - strandat 34.376 kb on - strandat 34.474 kb on + strandat 34.474 kb on + strandat 34.474 kb on + strandat 34.474 kb on + strandat 34.474 kb on + strandat 34.474 kb on + strandat 34.475 kb on - strandat 34.475 kb on - strandat 34.475 kb on - strandat 34.475 kb on - strandat 34.488 kb on - strandat 34.488 kb on - strandat 34.488 kb on - strandat 34.488 kb on - strandat 34.541 kb on - strandat 34.583 kb on + strandat 34.583 kb on + strandat 34.583 kb on + strandat 34.584 kb on - strandat 34.640 kb on + strand, within IAI47_00170at 34.652 kb on - strand, within IAI47_00170at 34.652 kb on - strand, within IAI47_00170at 34.728 kb on - strand, within IAI47_00170at 34.728 kb on - strand, within IAI47_00170at 34.739 kb on + strand, within IAI47_00170at 34.760 kb on + strand, within IAI47_00170at 34.760 kb on + strand, within IAI47_00170at 34.775 kb on + strand, within IAI47_00170at 34.775 kb on + strand, within IAI47_00170at 34.775 kb on + strand, within IAI47_00170at 34.776 kb on - strand, within IAI47_00170at 34.776 kb on - strand, within IAI47_00170at 34.776 kb on - strand, within IAI47_00170at 34.816 kb on - strand, within IAI47_00170at 34.828 kb on + strand, within IAI47_00170at 34.828 kb on + strand, within IAI47_00170at 34.828 kb on + strand, within IAI47_00170at 34.829 kb on - strand, within IAI47_00170at 34.829 kb on - strand, within IAI47_00170at 34.829 kb on - strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.846 kb on + strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.847 kb on - strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.850 kb on + strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.851 kb on - strand, within IAI47_00170at 34.856 kb on + strand, within IAI47_00170at 34.857 kb on - strand, within IAI47_00170at 34.857 kb on - strand, within IAI47_00170at 34.862 kb on + strand, within IAI47_00170at 34.862 kb on + strand, within IAI47_00170at 34.862 kb on + strand, within IAI47_00170at 34.862 kb on + strand, within IAI47_00170at 34.863 kb on - strand, within IAI47_00170at 34.863 kb on - strand, within IAI47_00170at 34.863 kb on - strand, within IAI47_00170at 34.921 kb on - strand, within IAI47_00170at 34.921 kb on - strand, within IAI47_00170at 34.992 kb on + strand, within IAI47_00170at 35.035 kb on + strand, within IAI47_00170at 35.066 kb on + strand, within IAI47_00170at 35.066 kb on + strand, within IAI47_00170at 35.066 kb on + strand, within IAI47_00170at 35.067 kb on - strand, within IAI47_00170at 35.067 kb on - strand, within IAI47_00170at 35.078 kb on + strand, within IAI47_00170at 35.079 kb on - strand, within IAI47_00170at 35.079 kb on - strand, within IAI47_00170at 35.140 kb on - strand, within IAI47_00170at 35.147 kb on + strand, within IAI47_00170at 35.148 kb on - strand, within IAI47_00170at 35.148 kb on - strand, within IAI47_00170at 35.176 kb on + strand, within IAI47_00170at 35.177 kb on - strand, within IAI47_00170

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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32,578 + IAI47_00155 0.64 +0.5
32,578 + IAI47_00155 0.64 +1.9
32,579 - IAI47_00155 0.64 +2.5
32,646 + IAI47_00155 0.74 -1.0
32,646 + IAI47_00155 0.74 -1.4
32,646 + IAI47_00155 0.74 -1.1
32,646 + IAI47_00155 0.74 -0.1
32,646 + IAI47_00155 0.74 +0.4
32,646 + IAI47_00155 0.74 -0.4
32,646 + IAI47_00155 0.74 -0.4
32,646 + IAI47_00155 0.74 -0.1
32,647 - IAI47_00155 0.74 +0.7
32,647 - IAI47_00155 0.74 -0.3
32,697 + IAI47_00155 0.81 +1.4
32,698 - IAI47_00155 0.81 -1.3
32,698 - IAI47_00155 0.81 +1.0
32,727 + IAI47_00155 0.85 -0.5
32,728 - IAI47_00155 0.86 -1.1
32,728 - IAI47_00155 0.86 +2.5
32,860 + -0.8
32,861 - -0.4
32,869 + +0.6
32,869 - +0.6
32,870 - -0.2
32,874 + +3.5
32,874 + +0.9
32,874 + +0.1
32,874 + +1.1
32,874 + -0.1
32,874 + -0.8
32,874 + -0.9
32,874 + -0.8
32,874 + -2.0
34,211 + -0.2
34,212 - -1.1
34,212 - +0.8
34,212 - -2.4
34,212 - -0.3
34,212 - +0.8
34,212 - -0.2
34,245 + +0.6
34,245 + -0.9
34,245 + -0.1
34,357 - -0.2
34,375 + -0.5
34,375 + -0.3
34,376 - +0.5
34,376 - +1.0
34,376 - +0.2
34,474 + -1.0
34,474 + -0.1
34,474 + +2.0
34,474 + +2.0
34,474 + +0.5
34,474 + +0.6
34,475 - +0.8
34,475 - +1.8
34,475 - -1.6
34,475 - -0.8
34,488 - +1.0
34,488 - +0.7
34,488 - +1.1
34,488 - -0.8
34,541 - -1.9
34,583 + -0.0
34,583 + +1.0
34,583 + -0.2
34,584 - -0.6
34,640 + IAI47_00170 0.11 +0.8
34,652 - IAI47_00170 0.12 -0.0
34,652 - IAI47_00170 0.12 -0.7
34,728 - IAI47_00170 0.19 +0.1
34,728 - IAI47_00170 0.19 -1.9
34,739 + IAI47_00170 0.20 -0.3
34,760 + IAI47_00170 0.22 +1.4
34,760 + IAI47_00170 0.22 -0.6
34,775 + IAI47_00170 0.23 -0.9
34,775 + IAI47_00170 0.23 +0.1
34,775 + IAI47_00170 0.23 -0.9
34,776 - IAI47_00170 0.23 +0.5
34,776 - IAI47_00170 0.23 +0.3
34,776 - IAI47_00170 0.23 -2.1
34,816 - IAI47_00170 0.27 -0.8
34,828 + IAI47_00170 0.28 +1.1
34,828 + IAI47_00170 0.28 -1.0
34,828 + IAI47_00170 0.28 +0.1
34,829 - IAI47_00170 0.28 -1.3
34,829 - IAI47_00170 0.28 -1.5
34,829 - IAI47_00170 0.28 -0.6
34,846 + IAI47_00170 0.29 +0.4
34,846 + IAI47_00170 0.29 +0.8
34,846 + IAI47_00170 0.29 -0.4
34,846 + IAI47_00170 0.29 +1.4
34,846 + IAI47_00170 0.29 +0.3
34,846 + IAI47_00170 0.29 +1.0
34,846 + IAI47_00170 0.29 -1.1
34,846 + IAI47_00170 0.29 -1.3
34,846 + IAI47_00170 0.29 -1.2
34,846 + IAI47_00170 0.29 +1.8
34,846 + IAI47_00170 0.29 -1.6
34,847 - IAI47_00170 0.30 -1.6
34,847 - IAI47_00170 0.30 -0.2
34,847 - IAI47_00170 0.30 +0.8
34,847 - IAI47_00170 0.30 +0.4
34,847 - IAI47_00170 0.30 -1.2
34,847 - IAI47_00170 0.30 -1.4
34,850 + IAI47_00170 0.30 -0.2
34,850 + IAI47_00170 0.30 -0.4
34,850 + IAI47_00170 0.30 -0.9
34,850 + IAI47_00170 0.30 -0.9
34,850 + IAI47_00170 0.30 -1.1
34,850 + IAI47_00170 0.30 +0.1
34,850 + IAI47_00170 0.30 -1.6
34,850 + IAI47_00170 0.30 -1.1
34,850 + IAI47_00170 0.30 +0.3
34,851 - IAI47_00170 0.30 -1.0
34,851 - IAI47_00170 0.30 +1.2
34,851 - IAI47_00170 0.30 -0.6
34,851 - IAI47_00170 0.30 +1.5
34,851 - IAI47_00170 0.30 +0.7
34,851 - IAI47_00170 0.30 +0.6
34,851 - IAI47_00170 0.30 -1.0
34,856 + IAI47_00170 0.30 -2.0
34,857 - IAI47_00170 0.30 -0.3
34,857 - IAI47_00170 0.30 -1.4
34,862 + IAI47_00170 0.31 -1.1
34,862 + IAI47_00170 0.31 -0.6
34,862 + IAI47_00170 0.31 +0.2
34,862 + IAI47_00170 0.31 +0.9
34,863 - IAI47_00170 0.31 +0.8
34,863 - IAI47_00170 0.31 +0.8
34,863 - IAI47_00170 0.31 -0.1
34,921 - IAI47_00170 0.36 +0.7
34,921 - IAI47_00170 0.36 -0.2
34,992 + IAI47_00170 0.42 -0.7
35,035 + IAI47_00170 0.46 -0.7
35,066 + IAI47_00170 0.49 -0.5
35,066 + IAI47_00170 0.49 -3.1
35,066 + IAI47_00170 0.49 +0.4
35,067 - IAI47_00170 0.49 -0.2
35,067 - IAI47_00170 0.49 -1.0
35,078 + IAI47_00170 0.50 -0.6
35,079 - IAI47_00170 0.50 -2.1
35,079 - IAI47_00170 0.50 -0.5
35,140 - IAI47_00170 0.55 -0.2
35,147 + IAI47_00170 0.56 +0.7
35,148 - IAI47_00170 0.56 +0.7
35,148 - IAI47_00170 0.56 +1.5
35,176 + IAI47_00170 0.59 +0.6
35,177 - IAI47_00170 0.59 +1.0

Or see this region's nucleotide sequence