Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03569

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
3,722,019	+		CCNA_03567	0.82	-1.2
3,722,019	+		CCNA_03567	0.82	-1.2
3,722,027	-		CCNA_03567	0.82	-1.8
3,722,033	+		CCNA_03567	0.83	-2.1
3,722,041	-		CCNA_03567	0.83	-1.2
3,722,054	-		CCNA_03567	0.84	-0.2
3,722,076	+		CCNA_03567	0.86	-2.8
3,722,134	-				-0.7
3,722,134	-				-2.1
3,722,134	-				-0.2
3,722,212	+				-2.0
3,722,245	+				-1.0
3,722,246	+				+1.1
3,722,252	+				-0.5
3,722,252	+				-0.2
3,722,252	+				+0.5
3,722,252	+				-1.2
3,722,259	+				-1.4
3,722,260	-				-0.5
3,722,267	+				-2.8
3,722,275	-				+0.3
3,722,330	+				-2.2
3,722,338	-				-1.7
3,722,417	+		CCNA_03568	0.10	+2.6
3,722,430	-		CCNA_03568	0.12	-0.4
3,722,439	+		CCNA_03568	0.14	+1.1
3,722,447	-		CCNA_03568	0.15	-0.7
3,722,469	+		CCNA_03568	0.18	-0.7
3,722,491	+		CCNA_03568	0.22	-0.2
3,722,499	-		CCNA_03568	0.23	-1.2
3,722,503	+		CCNA_03568	0.24	-1.8
3,722,508	+		CCNA_03568	0.24	-0.2
3,722,513	+		CCNA_03568	0.25	+1.0
3,722,526	-		CCNA_03568	0.27	-1.0
3,722,550	+		CCNA_03568	0.31	-1.8
3,722,550	+		CCNA_03568	0.31	+0.6
3,722,550	+		CCNA_03568	0.31	-1.8
3,722,550	+		CCNA_03568	0.31	-1.0
3,722,558	-		CCNA_03568	0.32	-1.6
3,722,558	-		CCNA_03568	0.32	-0.5
3,722,560	+		CCNA_03568	0.32	-0.2
3,722,560	+		CCNA_03568	0.32	-1.1
3,722,565	+		CCNA_03568	0.33	-2.1
3,722,566	+		CCNA_03568	0.33	-0.9
3,722,568	-		CCNA_03568	0.33	-1.2
3,722,590	+		CCNA_03568	0.37	-0.1
3,722,606	+		CCNA_03568	0.39	+2.6
3,722,616	+		CCNA_03568	0.41	-1.6
3,722,616	+		CCNA_03568	0.41	+0.9
3,722,616	+		CCNA_03568	0.41	+1.4
3,722,616	+		CCNA_03568	0.41	+0.8
3,722,616	+		CCNA_03568	0.41	-3.0
3,722,624	-		CCNA_03568	0.42	+0.7
3,722,624	-		CCNA_03568	0.42	+1.6
3,722,624	-		CCNA_03568	0.42	+3.4
3,722,624	-		CCNA_03568	0.42	-1.1
3,722,624	-		CCNA_03568	0.42	-1.5
3,722,639	+		CCNA_03568	0.44	+1.6
3,722,674	+		CCNA_03568	0.50	-1.7
3,722,713	-		CCNA_03568	0.56	+0.8
3,722,717	+		CCNA_03568	0.56	-0.7
3,722,725	-		CCNA_03568	0.58	-1.1
3,722,737	-		CCNA_03568	0.59	+1.4
3,722,737	-		CCNA_03568	0.59	-2.8
3,722,765	+		CCNA_03568	0.64	+1.0
3,722,801	+		CCNA_03568	0.69	-2.6
3,722,809	-		CCNA_03568	0.71	+0.8
3,722,828	-		CCNA_03568	0.73	-0.2
3,722,838	-		CCNA_03568	0.75	-0.4
3,722,838	-		CCNA_03568	0.75	+1.2
3,722,856	-		CCNA_03568	0.78	+0.1
3,722,859	-		CCNA_03568	0.78	-0.4
3,722,861	+		CCNA_03568	0.78	-1.1
3,722,866	+		CCNA_03568	0.79	+1.9
3,722,871	+		CCNA_03568	0.80	-2.7
3,722,871	+		CCNA_03568	0.80	+0.3
3,722,871	+		CCNA_03568	0.80	-0.8
3,722,871	+		CCNA_03568	0.80	+1.6
3,722,874	-		CCNA_03568	0.80	-0.7
3,722,878	+		CCNA_03568	0.81	+0.8
3,722,879	-		CCNA_03568	0.81	+0.2
3,722,879	-		CCNA_03568	0.81	-0.2
3,722,909	-		CCNA_03568	0.86	-1.5
3,722,935	+		CCNA_03568	0.90	-0.0
3,722,935	+		CCNA_03568	0.90	+1.0
3,722,955	+				-0.7
3,722,960	+				+1.0
3,722,992	+				+0.5
3,723,000	-				-1.7
3,723,002	+				-2.4
3,723,039	+				-2.6
3,723,039	+				+0.2
3,723,047	-				+0.9
3,723,047	-				+2.5
3,723,047	-				+0.1
3,723,063	+				-0.2
3,723,067	+				-0.7
3,723,071	-				-1.9
3,723,071	-				+0.0
3,723,079	+				+1.2
3,723,080	-				-0.2
3,723,082	-				-1.8
3,723,106	-		CCNA_03569	0.11	-1.6
3,723,133	-		CCNA_03569	0.14	+0.8
3,723,167	+		CCNA_03569	0.18	-0.1
3,723,170	-		CCNA_03569	0.18	+2.5
3,723,170	-		CCNA_03569	0.18	+2.1
3,723,170	-		CCNA_03569	0.18	+2.6
3,723,170	-		CCNA_03569	0.18	-0.1
3,723,184	-		CCNA_03569	0.20	-0.3
3,723,194	-		CCNA_03569	0.21	-0.9
3,723,197	+		CCNA_03569	0.21	-0.5
3,723,203	-		CCNA_03569	0.22	-0.2
3,723,205	-		CCNA_03569	0.22	-1.1
3,723,205	-		CCNA_03569	0.22	-0.5
3,723,205	-		CCNA_03569	0.22	-3.5
3,723,222	+		CCNA_03569	0.24	-0.4
3,723,230	-		CCNA_03569	0.25	-1.0
3,723,248	-		CCNA_03569	0.27	-1.8
3,723,313	+		CCNA_03569	0.34	-1.9
3,723,313	+		CCNA_03569	0.34	-3.1
3,723,321	+		CCNA_03569	0.35	-0.3
3,723,324	-		CCNA_03569	0.35	-3.2
3,723,354	+		CCNA_03569	0.38	-2.5
3,723,354	+		CCNA_03569	0.38	+0.9
3,723,362	-		CCNA_03569	0.39	-1.5
3,723,364	+		CCNA_03569	0.39	-2.0
3,723,364	+		CCNA_03569	0.39	-0.6
3,723,370	-		CCNA_03569	0.40	-0.4
3,723,372	-		CCNA_03569	0.40	+0.6
3,723,410	+		CCNA_03569	0.44	-0.3
3,723,429	+		CCNA_03569	0.46	+1.7
3,723,437	-		CCNA_03569	0.47	-2.4
3,723,437	-		CCNA_03569	0.47	-3.3
3,723,437	-		CCNA_03569	0.47	-0.5
3,723,461	+		CCNA_03569	0.50	-0.1
3,723,491	-		CCNA_03569	0.53	+1.6
3,723,501	+		CCNA_03569	0.54	-2.5
3,723,514	-		CCNA_03569	0.56	-1.4
3,723,514	-		CCNA_03569	0.56	+0.6
3,723,519	-		CCNA_03569	0.56	+0.0
3,723,590	-		CCNA_03569	0.64	+6.0
3,723,609	+		CCNA_03569	0.66	-1.8
3,723,645	+		CCNA_03569	0.70	+0.6
3,723,645	+		CCNA_03569	0.70	-0.8
3,723,646	+		CCNA_03569	0.70	-2.1
3,723,652	-		CCNA_03569	0.71	-1.4
3,723,675	+		CCNA_03569	0.73	-0.7
3,723,675	+		CCNA_03569	0.73	+1.6
3,723,746	+		CCNA_03569	0.81	-0.2
3,723,787	+		CCNA_03569	0.85	-3.3
3,723,792	+		CCNA_03569	0.86	-1.1
3,723,792	+		CCNA_03569	0.86	-3.2
3,723,792	+		CCNA_03569	0.86	-2.7
3,723,792	+		CCNA_03569	0.86	-3.3
3,723,792	+		CCNA_03569	0.86	-2.5
3,723,792	+		CCNA_03569	0.86	+0.5
3,723,792	+		CCNA_03569	0.86	+0.0
3,723,792	+		CCNA_03569	0.86	+0.5
3,723,792	+		CCNA_03569	0.86	+0.3
3,723,792	+		CCNA_03569	0.86	-1.9
3,723,795	-		CCNA_03569	0.86	+1.2
3,723,795	-		CCNA_03569	0.86	-1.4
3,723,800	-				-0.5
3,723,800	-		CCNA_03569	0.87	-1.2
3,723,800	-		CCNA_03569	0.87	+1.2
3,723,800	-		CCNA_03569	0.87	-1.0
3,723,800	-		CCNA_03569	0.87	+0.1
3,723,805	-		CCNA_03569	0.87	-2.4
3,723,814	+		CCNA_03569	0.88	-1.8
3,723,819	-		CCNA_03569	0.89	-3.5
3,723,824	-		CCNA_03569	0.89	-2.7
3,723,824	-		CCNA_03569	0.89	+0.8
3,723,905	+				-1.2
3,723,925	-				-2.2
3,723,931	+				-1.4
3,723,939	-				+1.0
3,723,955	-				-3.2
3,723,969	+				-1.0
3,723,983	+				+0.4
3,724,008	+		CCNA_03570	0.11	-1.2
3,724,008	+		CCNA_03570	0.11	-1.5
3,724,013	+		CCNA_03570	0.11	-2.4
3,724,013	+		CCNA_03570	0.11	+0.3
3,724,013	+		CCNA_03570	0.11	+0.8
3,724,014	-		CCNA_03570	0.11	-0.4
3,724,016	-		CCNA_03570	0.12	-1.8
3,724,016	-		CCNA_03570	0.12	+2.6
3,724,036	-		CCNA_03570	0.15	-1.1
3,724,073	+		CCNA_03570	0.20	+0.0
3,724,211	-		CCNA_03570	0.40	-1.0
3,724,238	+		CCNA_03570	0.44	+0.0
3,724,246	-		CCNA_03570	0.45	-2.2
3,724,272	+		CCNA_03570	0.49	-1.8
3,724,272	+		CCNA_03570	0.49	+1.0
3,724,280	-		CCNA_03570	0.50	+1.0
3,724,303	+		CCNA_03570	0.53	-1.2
3,724,322	+		CCNA_03570	0.56	-1.2
3,724,343	-		CCNA_03570	0.59	-0.5
3,724,370	+		CCNA_03570	0.63	-0.6
3,724,370	+		CCNA_03570	0.63	-1.7
3,724,370	+		CCNA_03570	0.63	+2.2
3,724,370	+		CCNA_03570	0.63	-1.1
3,724,390	+		CCNA_03570	0.66	-1.7
3,724,437	-		CCNA_03570	0.73	-1.3
3,724,437	-		CCNA_03570	0.73	-1.6
3,724,463	-		CCNA_03570	0.77	-1.7
3,724,463	-		CCNA_03570	0.77	-0.8
3,724,474	+		CCNA_03570	0.78	+0.0
3,724,495	-		CCNA_03570	0.81	-2.7
3,724,589	-				-2.0
3,724,607	-				-1.4
3,724,626	-				-0.2
3,724,670	-				-1.6
3,724,679	+				-0.4
3,724,679	+				-3.2
3,724,681	+				+2.6
3,724,687	-				-2.7
3,724,718	+		CCNA_03571	0.12	-0.7
3,724,727	-		CCNA_03571	0.13	-0.8
3,724,733	+		CCNA_03571	0.14	-0.8
3,724,741	-		CCNA_03571	0.15	+0.7
3,724,783	+		CCNA_03571	0.20	+1.2
3,724,798	+		CCNA_03571	0.22	+1.8
3,724,798	+		CCNA_03571	0.22	-0.7
3,724,804	+		CCNA_03571	0.22	-1.3
3,724,806	-		CCNA_03571	0.23	+2.6
3,724,806	-		CCNA_03571	0.23	-0.2
3,724,842	+		CCNA_03571	0.27	-0.2
3,724,844	+		CCNA_03571	0.28	-2.3
3,724,890	+		CCNA_03571	0.33	-0.7
3,724,906	+		CCNA_03571	0.35	+0.2
3,724,917	+		CCNA_03571	0.37	+2.6