Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03466

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
3,628,641	-		CCNA_03465	0.46	-2.1
3,628,658	-		CCNA_03465	0.47	-2.4
3,628,660	+		CCNA_03465	0.48	-1.1
3,628,664	-		CCNA_03465	0.48	-1.9
3,628,668	-		CCNA_03465	0.48	-2.6
3,628,668	-		CCNA_03465	0.48	-1.5
3,628,668	-		CCNA_03465	0.48	-3.0
3,628,709	+		CCNA_03465	0.52	+0.0
3,628,710	-		CCNA_03465	0.52	-1.6
3,628,710	-		CCNA_03465	0.52	-3.1
3,628,717	-		CCNA_03465	0.53	-0.4
3,628,717	-		CCNA_03465	0.53	+1.1
3,628,720	+		CCNA_03465	0.53	+2.6
3,628,728	-		CCNA_03465	0.54	-1.0
3,628,805	-		CCNA_03465	0.60	-1.1
3,628,806	+		CCNA_03465	0.61	-0.7
3,628,814	-		CCNA_03465	0.61	-1.5
3,628,814	-		CCNA_03465	0.61	-1.4
3,628,814	-		CCNA_03465	0.61	-1.2
3,628,824	-		CCNA_03465	0.62	-2.5
3,628,824	-		CCNA_03465	0.62	-2.4
3,628,824	-		CCNA_03465	0.62	-3.0
3,628,839	+		CCNA_03465	0.63	+1.0
3,628,847	-		CCNA_03465	0.64	-0.6
3,628,911	-		CCNA_03465	0.70	-1.0
3,628,922	+		CCNA_03465	0.71	-1.5
3,628,922	+		CCNA_03465	0.71	+1.0
3,628,930	-		CCNA_03465	0.72	-1.3
3,628,930	-		CCNA_03465	0.72	-3.0
3,628,930	-		CCNA_03465	0.72	-1.8
3,628,930	-		CCNA_03465	0.72	-0.6
3,628,959	+		CCNA_03465	0.74	-1.4
3,628,960	-		CCNA_03465	0.74	-2.6
3,628,965	-		CCNA_03465	0.75	-1.8
3,628,967	-		CCNA_03465	0.75	-3.2
3,628,975	-		CCNA_03465	0.76	-2.7
3,628,992	+		CCNA_03465	0.77	-2.1
3,629,014	-		CCNA_03465	0.79	-0.2
3,629,056	+		CCNA_03465	0.83	-0.7
3,629,056	+		CCNA_03465	0.83	-0.8
3,629,077	+		CCNA_03465	0.85	-0.2
3,629,080	+		CCNA_03465	0.85	-1.0
3,629,088	-		CCNA_03465	0.86	-1.9
3,629,088	-		CCNA_03465	0.86	-2.0
3,629,124	+		CCNA_03465	0.89	-3.5
3,629,129	+		CCNA_03465	0.89	+0.0
3,629,129	+		CCNA_03465	0.89	-1.3
3,629,129	+		CCNA_03465	0.89	-0.2
3,629,137	-		CCNA_03465	0.90	-3.0
3,629,137	-		CCNA_03465	0.90	-2.4
3,629,137	-		CCNA_03465	0.90	-3.2
3,629,137	-		CCNA_03465	0.90	-2.3
3,629,137	-		CCNA_03465	0.90	-4.8
3,629,137	-		CCNA_03465	0.90	-3.7
3,629,198	+				-2.8
3,629,211	-				-1.6
3,629,235	+				-3.3
3,629,235	+				-1.2
3,629,235	+				+0.0
3,629,235	+				-2.3
3,629,239	-				-0.7
3,629,243	-				-3.0
3,629,243	-				-1.7
3,629,267	-				+0.6
3,629,310	+				+2.6
3,629,368	-				-4.0
3,629,374	-				-2.4
3,629,374	-				-3.6
3,629,417	+				-0.8
3,629,424	-				-2.8
3,629,424	-				-1.5
3,629,433	+				+2.6
3,629,441	-				-5.3
3,629,441	-				-4.2
3,629,502	-				-1.3
3,629,505	+				-3.0
3,629,505	+				-2.0
3,629,512	-				+0.2
3,629,517	+				+1.6
3,629,546	-				+1.3
3,629,550	+				+2.3
3,629,550	+				-0.5
3,629,550	+				-3.1
3,629,550	+				+1.3
3,629,550	+				-1.4
3,629,550	+				-1.5
3,629,550	+				-0.7
3,629,558	-				+0.3
3,629,558	-				-1.0
3,629,558	-				-0.6
3,629,658	-				-2.0
3,629,721	-		CCNA_03466	0.11	+1.0
3,629,746	+		CCNA_03466	0.14	-2.1
3,629,746	-		CCNA_03466	0.14	-3.0
3,629,786	+		CCNA_03466	0.19	-1.8
3,629,800	+		CCNA_03466	0.21	-1.6
3,629,800	+		CCNA_03466	0.21	+2.3
3,629,802	-		CCNA_03466	0.21	-3.0
3,629,808	-		CCNA_03466	0.22	-0.1
3,629,880	+		CCNA_03466	0.31	-0.2
3,629,886	+		CCNA_03466	0.31	+4.3
3,629,945	+		CCNA_03466	0.39	-0.0
3,629,948	+		CCNA_03466	0.39	+2.2
3,629,953	-		CCNA_03466	0.40	-2.3
3,630,000	+		CCNA_03466	0.46	-1.1
3,630,000	+		CCNA_03466	0.46	+0.0
3,630,018	-		CCNA_03466	0.48	+0.4
3,630,060	+		CCNA_03466	0.53	-0.4
3,630,089	+		CCNA_03466	0.57	-1.3
3,630,138	+		CCNA_03466	0.63	+1.3
3,630,138	+		CCNA_03466	0.63	-2.0
3,630,138	+		CCNA_03466	0.63	-1.5
3,630,138	+		CCNA_03466	0.63	-1.5
3,630,138	+		CCNA_03466	0.63	+1.0
3,630,138	+		CCNA_03466	0.63	-1.3
3,630,138	+		CCNA_03466	0.63	-1.8
3,630,146	-		CCNA_03466	0.64	-2.4
3,630,146	-		CCNA_03466	0.64	+0.7
3,630,153	-		CCNA_03466	0.65	-0.1
3,630,175	+		CCNA_03466	0.67	-0.8
3,630,194	+		CCNA_03466	0.70	+1.9
3,630,201	+		CCNA_03466	0.71	-0.2
3,630,202	-		CCNA_03466	0.71	-2.3
3,630,232	+		CCNA_03466	0.74	-0.1
3,630,271	-		CCNA_03466	0.79	-1.2
3,630,271	-		CCNA_03466	0.79	+0.0
3,630,286	-		CCNA_03466	0.81	-0.5
3,630,286	-		CCNA_03466	0.81	+0.6
3,630,299	+		CCNA_03466	0.83	-1.4
3,630,307	-		CCNA_03466	0.84	+1.8
3,630,345	-		CCNA_03466	0.88	+1.7
3,630,352	+		CCNA_03466	0.89	+0.3
3,630,352	+		CCNA_03466	0.89	+0.0
3,630,383	-				-0.2
3,630,384	-				-1.1
3,630,384	-				+0.1
3,630,433	-				-2.0
3,630,439	-				+2.3
3,630,451	+				-1.6
3,630,464	-				+1.8
3,630,468	+				+0.7
3,630,491	+				+0.1
3,630,498	+				-0.2
3,630,498	+				-1.8
3,630,498	+				+0.5
3,630,500	-				+0.7
3,630,506	-				+1.2
3,630,521	-				+2.0
3,630,560	-				+0.7
3,630,572	-				-1.1
3,630,594	-				+0.5
3,630,606	+				+1.5
3,630,611	+				+0.1
3,630,618	+				+1.0
3,630,618	+				-0.8
3,630,618	+				-0.8
3,630,618	+				+0.0
3,630,618	+				-2.7
3,630,618	+				-1.6
3,630,619	-				+1.6
3,630,626	-				+1.1
3,630,626	-				-0.7
3,630,626	-				+1.6
3,630,626	-				+1.1
3,630,680	-				-0.7
3,630,689	+		CCNA_03467	0.10	+1.3
3,630,779	+		CCNA_03467	0.14	-1.0
3,630,786	+		CCNA_03467	0.14	-0.5
3,630,791	+		CCNA_03467	0.14	+0.4
3,630,812	-		CCNA_03467	0.15	+1.2
3,630,837	+		CCNA_03467	0.16	-0.7
3,630,845	-		CCNA_03467	0.16	+0.8
3,630,859	-		CCNA_03467	0.17	+1.4
3,630,859	-		CCNA_03467	0.17	+0.4
3,630,872	-		CCNA_03467	0.17	-0.3
3,630,872	-		CCNA_03467	0.17	-0.5
3,630,879	+		CCNA_03467	0.18	-1.4
3,630,879	+		CCNA_03467	0.18	-0.7
3,630,887	-		CCNA_03467	0.18	+1.8
3,630,887	-		CCNA_03467	0.18	+1.4
3,630,887	-		CCNA_03467	0.18	+1.7
3,630,953	+		CCNA_03467	0.21	+2.6
3,630,953	-		CCNA_03467	0.21	+2.6
3,630,961	-		CCNA_03467	0.21	+0.6
3,630,962	-		CCNA_03467	0.21	-3.3
3,630,990	-		CCNA_03467	0.22	-2.6
3,630,997	+		CCNA_03467	0.22	-2.3
3,631,087	+		CCNA_03467	0.26	-1.4
3,631,095	-		CCNA_03467	0.26	+1.8
3,631,107	-		CCNA_03467	0.27	-0.4
3,631,107	-		CCNA_03467	0.27	+1.1
3,631,127	+		CCNA_03467	0.28	-0.9
3,631,127	+		CCNA_03467	0.28	+0.5
3,631,193	-		CCNA_03467	0.30	-0.8
3,631,238	-		CCNA_03467	0.32	+0.6
3,631,238	-		CCNA_03467	0.32	+0.2
3,631,244	+		CCNA_03467	0.32	-0.5
3,631,257	-		CCNA_03467	0.33	+1.0
3,631,281	+		CCNA_03467	0.34	-1.4
3,631,289	-		CCNA_03467	0.34	+0.8
3,631,289	-		CCNA_03467	0.34	-1.9
3,631,322	+		CCNA_03467	0.35	-3.5
3,631,322	+		CCNA_03467	0.35	-2.7
3,631,330	-		CCNA_03467	0.36	-2.7
3,631,330	-		CCNA_03467	0.36	+1.6
3,631,413	+		CCNA_03467	0.39	+0.5
3,631,419	+		CCNA_03467	0.39	+1.0
3,631,421	-		CCNA_03467	0.39	-3.0
3,631,425	+		CCNA_03467	0.40	-3.2