Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03347

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
3,525,499	-		CCNA_03345	0.45	-3.1
3,525,590	+		CCNA_03345	0.60	+2.6
3,525,615	+		CCNA_03345	0.64	-0.6
3,525,658	-		CCNA_03345	0.71	+0.2
3,525,710	-		CCNA_03345	0.79	-2.1
3,525,717	+		CCNA_03345	0.80	-1.0
3,525,842	+				+1.6
3,525,907	+		CCNA_03346	0.14	+2.6
3,526,026	+		CCNA_03346	0.37	-0.6
3,526,044	-		CCNA_03346	0.40	+1.6
3,526,063	-		CCNA_03346	0.44	+0.3
3,526,124	-		CCNA_03346	0.56	+0.6
3,526,176	+		CCNA_03346	0.66	-0.2
3,526,176	-		CCNA_03346	0.66	-1.3
3,526,361	-				+0.5
3,526,376	+				-2.1
3,526,415	-				+0.5
3,526,417	+				-1.7
3,526,418	-				-1.9
3,526,437	-				-0.3
3,526,439	+				+0.2
3,526,454	+				-1.5
3,526,454	+				+1.6
3,526,460	+				+1.0
3,526,461	+				-0.7
3,526,461	+				+0.8
3,526,469	-				-2.1
3,526,469	-				-3.2
3,526,469	-				-2.6
3,526,469	-				-2.0
3,526,469	-				+0.9
3,526,505	-				+1.8
3,526,556	-				-1.7
3,526,558	+				+0.3
3,526,558	+				-0.0
3,526,558	+				+0.5
3,526,558	+				-2.7
3,526,566	-				+1.0
3,526,566	-				-0.4
3,526,597	+				-5.0
3,526,602	+				+0.6
3,526,602	+				-0.8
3,526,631	-		CCNA_03347	0.11	-2.7
3,526,631	-		CCNA_03347	0.11	+1.1
3,526,642	+		CCNA_03347	0.11	-2.3
3,526,650	-		CCNA_03347	0.12	-1.7
3,526,672	-		CCNA_03347	0.13	+0.6
3,526,678	+		CCNA_03347	0.14	+0.4
3,526,686	-		CCNA_03347	0.14	-0.3
3,526,716	-		CCNA_03347	0.16	-1.6
3,526,725	+		CCNA_03347	0.17	+1.6
3,526,725	+		CCNA_03347	0.17	-0.6
3,526,733	-		CCNA_03347	0.18	-0.7
3,526,734	-		CCNA_03347	0.18	-3.2
3,526,745	+		CCNA_03347	0.19	-1.7
3,526,760	+		CCNA_03347	0.20	+0.6
3,526,789	+		CCNA_03347	0.22	+0.3
3,526,809	+		CCNA_03347	0.23	+4.3
3,526,819	+		CCNA_03347	0.24	-0.6
3,526,823	-		CCNA_03347	0.24	-1.7
3,526,825	+		CCNA_03347	0.24	-1.5
3,526,862	-		CCNA_03347	0.27	-0.9
3,526,862	-		CCNA_03347	0.27	-1.8
3,526,864	+		CCNA_03347	0.27	-3.2
3,526,921	-		CCNA_03347	0.31	-0.5
3,526,921	-		CCNA_03347	0.31	+1.8
3,526,971	-		CCNA_03347	0.34	-1.5
3,526,981	+		CCNA_03347	0.35	-3.1
3,526,981	+		CCNA_03347	0.35	-1.5
3,526,981	+		CCNA_03347	0.35	+1.2
3,526,984	+		CCNA_03347	0.35	-2.7
3,526,991	+		CCNA_03347	0.36	-1.7
3,526,999	-		CCNA_03347	0.36	-1.3
3,526,999	-		CCNA_03347	0.36	+2.6
3,527,004	-				+1.4
3,527,006	+		CCNA_03347	0.37	-1.7
3,527,018	+		CCNA_03347	0.38	-2.6
3,527,018	+		CCNA_03347	0.38	-0.1
3,527,018	+		CCNA_03347	0.38	-1.3
3,527,018	+		CCNA_03347	0.38	-2.4
3,527,018	+		CCNA_03347	0.38	-0.2
3,527,062	+		CCNA_03347	0.41	-1.0
3,527,094	+		CCNA_03347	0.43	-0.0
3,527,094	+		CCNA_03347	0.43	+0.6
3,527,099	+		CCNA_03347	0.43	+1.0
3,527,102	-		CCNA_03347	0.44	-1.2
3,527,102	-		CCNA_03347	0.44	-1.5
3,527,102	-		CCNA_03347	0.44	+2.6
3,527,116	+		CCNA_03347	0.45	-1.2
3,527,116	+		CCNA_03347	0.45	-1.2
3,527,116	+		CCNA_03347	0.45	-1.8
3,527,116	+		CCNA_03347	0.45	+0.5
3,527,116	+		CCNA_03347	0.45	-0.6
3,527,124	-		CCNA_03347	0.45	+0.6
3,527,124	-		CCNA_03347	0.45	-2.1
3,527,131	-		CCNA_03347	0.46	-0.2
3,527,131	-		CCNA_03347	0.46	-1.7
3,527,138	+		CCNA_03347	0.46	+0.1
3,527,155	+		CCNA_03347	0.47	-0.3
3,527,155	+		CCNA_03347	0.47	+0.9
3,527,165	-		CCNA_03347	0.48	-0.6
3,527,167	-		CCNA_03347	0.48	-0.6
3,527,174	-		CCNA_03347	0.49	-1.2
3,527,174	-		CCNA_03347	0.49	-1.4
3,527,182	+		CCNA_03347	0.49	-2.6
3,527,185	-		CCNA_03347	0.49	+2.6
3,527,198	+				-0.0
3,527,206	-		CCNA_03347	0.51	-0.0
3,527,213	+		CCNA_03347	0.51	-3.1
3,527,221	-		CCNA_03347	0.52	+0.6
3,527,254	-		CCNA_03347	0.54	-1.1
3,527,254	-		CCNA_03347	0.54	-2.7
3,527,254	-		CCNA_03347	0.54	+0.3
3,527,255	-		CCNA_03347	0.54	+0.4
3,527,257	+		CCNA_03347	0.54	+0.0
3,527,262	+		CCNA_03347	0.55	-3.8
3,527,265	-		CCNA_03347	0.55	-4.1
3,527,270	-		CCNA_03347	0.55	-2.3
3,527,298	+		CCNA_03347	0.57	-0.7
3,527,302	+		CCNA_03347	0.58	-1.1
3,527,302	+		CCNA_03347	0.58	+0.9
3,527,302	+		CCNA_03347	0.58	+2.2
3,527,305	-		CCNA_03347	0.58	+0.8
3,527,307	+		CCNA_03347	0.58	-1.9
3,527,315	-		CCNA_03347	0.59	-1.7
3,527,315	-		CCNA_03347	0.59	-0.4
3,527,320	-		CCNA_03347	0.59	+0.3
3,527,337	-		CCNA_03347	0.60	-0.3
3,527,395	+		CCNA_03347	0.64	-1.7
3,527,440	-		CCNA_03347	0.67	-2.4
3,527,453	+		CCNA_03347	0.68	-1.9
3,527,453	+		CCNA_03347	0.68	-1.1
3,527,453	+		CCNA_03347	0.68	-0.0
3,527,453	+		CCNA_03347	0.68	-1.2
3,527,461	-		CCNA_03347	0.69	+1.4
3,527,517	+		CCNA_03347	0.73	-0.6
3,527,517	+		CCNA_03347	0.73	-0.0
3,527,517	+		CCNA_03347	0.73	+1.8
3,527,548	+		CCNA_03347	0.75	-0.9
3,527,548	+		CCNA_03347	0.75	+0.6
3,527,548	+		CCNA_03347	0.75	-1.5
3,527,548	+		CCNA_03347	0.75	-1.0
3,527,548	+		CCNA_03347	0.75	-1.1
3,527,553	+		CCNA_03347	0.75	-2.3
3,527,556	-		CCNA_03347	0.75	-0.3
3,527,556	-		CCNA_03347	0.75	+1.6
3,527,561	-		CCNA_03347	0.76	+0.9
3,527,592	+		CCNA_03347	0.78	-2.7
3,527,600	-		CCNA_03347	0.79	-0.3
3,527,610	+		CCNA_03347	0.79	-2.8
3,527,610	+		CCNA_03347	0.79	-0.4
3,527,610	+		CCNA_03347	0.79	+1.2
3,527,618	-		CCNA_03347	0.80	+2.6
3,527,618	-		CCNA_03347	0.80	-0.4
3,527,663	+				-0.9
3,527,663	+				-2.3
3,527,671	-				-2.3
3,527,691	-				+1.6
3,527,704	-				+0.5
3,527,738	+				+1.0
3,527,738	+				+1.3
3,527,738	+				+0.6
3,527,738	+				+0.6
3,527,738	+				-1.6
3,527,746	-				+1.8
3,527,746	-				-1.8
3,527,746	-				-1.2
3,527,746	-				-2.3
3,527,746	-				-1.1
3,527,746	-				-0.2
3,527,746	-				-0.9
3,527,746	-				+3.2
3,527,746	-				-1.7
3,527,774	-				-1.2
3,527,785	+				-0.2
3,527,785	+				-0.0
3,527,785	+				-1.8
3,527,793	-				+6.9
3,527,813	-				+0.3
3,527,817	+				+1.2
3,527,825	-				+1.6
3,527,825	-				+0.9
3,527,825	-				-1.7
3,527,825	-				-3.0
3,527,874	+				-0.0
3,527,874	+				+0.6
3,527,874	+				+0.4
3,527,874	+				-0.4
3,527,879	+				-1.8
3,527,879	+				-1.8
3,527,882	-				-2.5
3,527,882	-				+0.9
3,527,884	+				-1.2
3,527,887	-				+1.0
3,527,887	-				-0.9
3,527,887	-				-1.9
3,527,887	-				-1.7
3,527,887	-				-0.0
3,527,887	-				-1.7
3,527,933	+				+0.5
3,528,010	+				-1.6
3,528,010	+				-1.8
3,528,045	+				-1.9
3,528,046	+				-1.8
3,528,093	+				-0.5
3,528,107	+				-1.6
3,528,107	+				+2.8
3,528,107	+				-1.3
3,528,156	+		CCNA_03348	0.14	-1.7
3,528,164	-		CCNA_03348	0.15	-2.0
3,528,166	+		CCNA_03348	0.15	+1.5
3,528,174	+		CCNA_03348	0.16	-0.1
3,528,174	+		CCNA_03348	0.16	-0.1
3,528,175	-		CCNA_03348	0.16	+3.3
3,528,182	-		CCNA_03348	0.16	-1.7
3,528,182	-		CCNA_03348	0.16	-1.1
3,528,192	-		CCNA_03348	0.17	+0.6
3,528,201	-		CCNA_03348	0.18	-0.2
3,528,201	-		CCNA_03348	0.18	-1.7
3,528,233	-		CCNA_03348	0.22	+2.7
3,528,258	+		CCNA_03348	0.24	-3.5
3,528,258	+		CCNA_03348	0.24	-2.2
3,528,258	+		CCNA_03348	0.24	-2.4
3,528,258	+		CCNA_03348	0.24	+0.4
3,528,258	+		CCNA_03348	0.24	-0.5
3,528,281	+		CCNA_03348	0.27	-0.7
3,528,289	-		CCNA_03348	0.28	-0.6
3,528,289	-		CCNA_03348	0.28	+2.6
3,528,294	-		CCNA_03348	0.28	-0.9
3,528,338	+		CCNA_03348	0.33	+0.6
3,528,360	+		CCNA_03348	0.35	+2.6
3,528,368	-		CCNA_03348	0.36	-1.5
3,528,377	+		CCNA_03348	0.37	-1.6
3,528,377	+		CCNA_03348	0.37	-1.3
3,528,382	+		CCNA_03348	0.37	-2.0
3,528,395	-		CCNA_03348	0.39	-2.2
3,528,406	-		CCNA_03348	0.40	-1.5
3,528,406	-		CCNA_03348	0.40	+2.6
3,528,427	-		CCNA_03348	0.42	-0.3
3,528,434	+		CCNA_03348	0.43	+0.8
3,528,439	+		CCNA_03348	0.43	+0.3
3,528,444	+		CCNA_03348	0.44	-2.4
3,528,478	+		CCNA_03348	0.47	-2.5
3,528,488	+		CCNA_03348	0.48	-2.1
3,528,488	+		CCNA_03348	0.48	-0.6
3,528,496	-		CCNA_03348	0.49	+2.6
3,528,496	-		CCNA_03348	0.49	+0.6
3,528,496	-		CCNA_03348	0.49	+1.0
3,528,500	+		CCNA_03348	0.50	+1.5
3,528,500	+		CCNA_03348	0.50	+1.1
3,528,557	+		CCNA_03348	0.56	-0.2
3,528,609	+		CCNA_03348	0.61	+1.6
3,528,652	+		CCNA_03348	0.66	-0.7
3,528,668	-		CCNA_03348	0.67	-0.9
3,528,729	-		CCNA_03348	0.74	+0.6
3,528,752	+		CCNA_03348	0.76	+1.7
3,528,752	+		CCNA_03348	0.76	+0.3
3,528,752	-		CCNA_03348	0.76	-0.7
3,528,772	-		CCNA_03348	0.78	-0.7
3,528,881	-		CCNA_03348	0.89	-2.9
3,528,905	-				-0.9