Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01857

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
1,988,673	-		CCNA_01856	0.57	-1.2
1,988,681	+		CCNA_01856	0.57	+0.2
1,988,700	+		CCNA_01856	0.58	-1.2
1,988,700	+		CCNA_01856	0.58	-0.2
1,988,708	-		CCNA_01856	0.58	+1.0
1,988,708	-		CCNA_01856	0.58	-0.5
1,988,713	-		CCNA_01856	0.58	+3.0
1,988,849	+		CCNA_01856	0.65	+0.6
1,988,857	-		CCNA_01856	0.65	+3.0
1,988,859	+		CCNA_01856	0.65	+2.2
1,988,867	-		CCNA_01856	0.65	-1.4
1,988,868	+		CCNA_01856	0.65	+0.9
1,988,876	-		CCNA_01856	0.66	-2.5
1,988,955	+		CCNA_01856	0.69	+2.6
1,988,961	+		CCNA_01856	0.70	-0.1
1,988,982	+		CCNA_01856	0.71	+0.7
1,988,982	+		CCNA_01856	0.71	+2.5
1,988,990	-		CCNA_01856	0.71	-0.4
1,988,992	-		CCNA_01856	0.71	+1.5
1,989,022	+		CCNA_01856	0.72	+3.9
1,989,022	+		CCNA_01856	0.72	-0.8
1,989,052	-		CCNA_01856	0.74	+3.0
1,989,085	-		CCNA_01856	0.75	-1.4
1,989,173	-		CCNA_01856	0.79	-1.2
1,989,173	-		CCNA_01856	0.79	+3.0
1,989,174	+		CCNA_01856	0.79	+3.5
1,989,209	+		CCNA_01856	0.81	+0.7
1,989,232	+		CCNA_01856	0.82	-2.4
1,989,232	+		CCNA_01856	0.82	-0.8
1,989,242	+		CCNA_01856	0.82	-1.0
1,989,252	+				+0.0
1,989,278	+		CCNA_01856	0.84	+2.5
1,989,278	+		CCNA_01856	0.84	-0.4
1,989,279	+		CCNA_01856	0.84	-1.4
1,989,286	-		CCNA_01856	0.84	+1.0
1,989,287	-		CCNA_01856	0.85	+1.5
1,989,287	-		CCNA_01856	0.85	+0.2
1,989,324	+		CCNA_01856	0.86	+1.1
1,989,368	+		CCNA_01856	0.88	+1.4
1,989,368	+		CCNA_01856	0.88	+1.6
1,989,368	+		CCNA_01856	0.88	+0.8
1,989,418	+				+1.3
1,989,426	-				+1.5
1,989,428	+				+1.2
1,989,428	+				+2.0
1,989,428	+				-0.3
1,989,428	+				+2.0
1,989,436	-				+2.1
1,989,436	-				-1.2
1,989,449	+				+1.6
1,989,459	-				+1.5
1,989,459	-				+2.1
1,989,473	+				+0.5
1,989,473	+				+1.2
1,989,492	-				+3.1
1,989,494	+				+2.2
1,989,537	-				-0.0
1,989,571	+				+2.0
1,989,579	-				+0.7
1,989,582	+				+1.4
1,989,644	+				+0.4
1,989,671	+				+0.2
1,989,688	+				+0.2
1,989,696	-				+0.5
1,989,713	+				+1.3
1,989,718	+				+1.5
1,989,735	+				-0.2
1,989,779	+		CCNA_01857	0.10	+0.2
1,989,779	+		CCNA_01857	0.10	+1.2
1,989,835	+		CCNA_01857	0.14	+2.3
1,989,836	+		CCNA_01857	0.15	+2.5
1,989,841	+		CCNA_01857	0.15	+1.4
1,989,843	-		CCNA_01857	0.15	+0.5
1,989,843	-		CCNA_01857	0.15	-0.6
1,989,848	+		CCNA_01857	0.16	-1.5
1,989,849	-		CCNA_01857	0.16	+0.6
1,989,888	+		CCNA_01857	0.19	+0.2
1,989,916	+		CCNA_01857	0.21	+0.8
1,989,924	-		CCNA_01857	0.22	-2.0
1,989,924	-		CCNA_01857	0.22	-1.3
1,989,932	+		CCNA_01857	0.22	+0.4
1,989,942	+		CCNA_01857	0.23	+0.2
1,989,959	+		CCNA_01857	0.24	+4.2
1,989,965	+		CCNA_01857	0.25	+0.1
1,989,965	+		CCNA_01857	0.25	+1.9
1,989,973	-		CCNA_01857	0.25	+0.5
1,989,973	-		CCNA_01857	0.25	-0.6
1,989,986	+		CCNA_01857	0.26	+1.0
1,989,995	+		CCNA_01857	0.27	+0.9
1,990,000	+		CCNA_01857	0.28	+2.8
1,990,001	+		CCNA_01857	0.28	-0.8
1,990,310	+		CCNA_01857	0.52	-2.0
1,990,310	+		CCNA_01857	0.52	-0.2
1,990,318	-		CCNA_01857	0.53	+0.2
1,990,325	+		CCNA_01857	0.53	+1.0
1,990,363	-		CCNA_01857	0.56	-0.2
1,990,376	+		CCNA_01857	0.58	+1.3
1,990,376	+		CCNA_01857	0.58	+1.0
1,990,376	+		CCNA_01857	0.58	+2.2
1,990,376	+		CCNA_01857	0.58	-0.6
1,990,384	-		CCNA_01857	0.58	-2.0
1,990,384	-		CCNA_01857	0.58	+1.1
1,990,384	-		CCNA_01857	0.58	+1.1
1,990,448	+		CCNA_01857	0.63	+1.3
1,990,456	-		CCNA_01857	0.64	+0.7
1,990,456	-		CCNA_01857	0.64	+3.1
1,990,456	-		CCNA_01857	0.64	+0.2
1,990,477	-		CCNA_01857	0.66	+0.2
1,990,478	+		CCNA_01857	0.66	+1.9
1,990,498	-		CCNA_01857	0.67	+3.1
1,990,500	-		CCNA_01857	0.67	-1.6
1,990,533	+		CCNA_01857	0.70	+1.1
1,990,551	+		CCNA_01857	0.71	-0.3
1,990,605	-		CCNA_01857	0.76	-0.4
1,990,612	-		CCNA_01857	0.76	+0.7
1,990,633	+		CCNA_01857	0.78	-2.5
1,990,718	-		CCNA_01857	0.85	+3.1
1,990,740	+		CCNA_01857	0.86	+0.8
1,990,742	+		CCNA_01857	0.87	+1.4
1,990,756	+		CCNA_01857	0.88	+2.6
1,990,823	+				-1.7
1,990,835	+				+1.1
1,990,876	-				+2.1
1,990,903	+				+0.8
1,990,903	+				+0.7
1,990,903	+				+2.5
1,990,903	+				+0.6
1,990,903	+				+0.6
1,990,911	-				-2.2
1,990,975	+		CCNA_01858	0.12	+1.5
1,990,983	+		CCNA_01858	0.13	+0.4
1,990,990	+		CCNA_01858	0.14	+1.2
1,991,025	+		CCNA_01858	0.17	+2.8
1,991,075	+		CCNA_01858	0.23	-0.2
1,991,075	+		CCNA_01858	0.23	+1.6
1,991,075	+		CCNA_01858	0.23	+0.2
1,991,137	+		CCNA_01858	0.30	-0.3
1,991,145	-		CCNA_01858	0.31	-0.8
1,991,183	+		CCNA_01858	0.35	+2.2
1,991,211	+		CCNA_01858	0.38	+1.7
1,991,279	-		CCNA_01858	0.46	-0.6
1,991,279	-		CCNA_01858	0.46	-0.6
1,991,296	+		CCNA_01858	0.48	-0.7
1,991,304	-		CCNA_01858	0.48	-0.1
1,991,353	+		CCNA_01858	0.54	+2.1
1,991,353	+		CCNA_01858	0.54	+0.1
1,991,417	+		CCNA_01858	0.61	-0.6
1,991,425	-		CCNA_01858	0.62	+1.1
1,991,461	+		CCNA_01858	0.66	-2.6
1,991,461	+		CCNA_01858	0.66	+2.2
1,991,469	-		CCNA_01858	0.67	+3.1
1,991,469	-		CCNA_01858	0.67	-2.2
1,991,471	+		CCNA_01858	0.67	+1.2
1,991,509	-		CCNA_01858	0.71	-2.0
1,991,549	-		CCNA_01858	0.76	+3.1
1,991,570	+		CCNA_01858	0.78	+1.3
1,991,570	+		CCNA_01858	0.78	+1.1
1,991,570	+		CCNA_01858	0.78	+1.2
1,991,580	+		CCNA_01858	0.79	+1.0
1,991,583	-		CCNA_01858	0.79	-0.5
1,991,613	+		CCNA_01858	0.83	+2.3
1,991,613	+		CCNA_01858	0.83	-0.9
1,991,613	+		CCNA_01858	0.83	-1.0
1,991,613	+		CCNA_01858	0.83	+0.6
1,991,613	+		CCNA_01858	0.83	+1.8
1,991,613	+		CCNA_01858	0.83	+1.7
1,991,613	+		CCNA_01858	0.83	+0.5
1,991,621	-		CCNA_01858	0.83	-1.0
1,991,646	+		CCNA_01858	0.86	+3.3
1,991,656	+		CCNA_01858	0.87	+2.7
1,991,656	+		CCNA_01858	0.87	+2.1
1,991,682	+				+1.6
1,991,682	+				+0.6
1,991,682	+				-2.4
1,991,682	+				-1.8
1,991,682	+				+0.7
1,991,682	+				-2.3
1,991,682	+				+1.1
1,991,690	-				-0.5
1,991,753	+				+1.3
1,991,754	+				+1.0
1,991,762	-				-0.8
1,991,762	-				-0.4
1,991,762	-				-1.4
1,991,763	+				+2.6
1,991,763	+				-1.6
1,991,771	-				+3.1
1,991,772	-				+0.1
1,991,776	+				+1.7
1,991,794	+				+2.9
1,991,842	-				-0.8
1,991,846	+				+1.9
1,991,846	+				-1.2
1,991,890	+				+0.4
1,991,900	+				+2.2