Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01332

Experiment: PYE_noCalcium 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01330 and CCNA_01332 are separated by 204 nucleotidesCCNA_01332 and CCNA_01333 are separated by 443 nucleotides CCNA_01330: CCNA_01330 - DNA-directed RNA polymerase alpha chain, at 1,444,254 to 1,445,270 _01330 CCNA_01332: CCNA_01332 - LSU ribosomal protein L17P, at 1,445,475 to 1,445,888 _01332 CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724 _01333 Position (kb) 1445 1446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1445.918 kb on + strandat 1445.960 kb on + strandat 1446.001 kb on + strandat 1446.044 kb on - strandat 1446.046 kb on - strandat 1446.046 kb on - strandat 1446.046 kb on - strandat 1446.046 kb on - strandat 1446.076 kb on - strandat 1446.076 kb on - strandat 1446.116 kb on + strandat 1446.174 kb on - strandat 1446.191 kb on + strandat 1446.197 kb on + strandat 1446.234 kb on - strandat 1446.234 kb on - strandat 1446.247 kb on + strandat 1446.348 kb on + strandat 1446.353 kb on - strandat 1446.412 kb on - strand, within CCNA_01333at 1446.495 kb on + strand, within CCNA_01333at 1446.577 kb on + strand, within CCNA_01333at 1446.577 kb on + strand, within CCNA_01333at 1446.577 kb on + strand, within CCNA_01333at 1446.649 kb on - strand, within CCNA_01333at 1446.649 kb on - strand, within CCNA_01333at 1446.649 kb on - strand, within CCNA_01333at 1446.675 kb on + strand, within CCNA_01333at 1446.714 kb on + strandat 1446.769 kb on - strandat 1446.769 kb on - strandat 1446.813 kb on - strandat 1446.861 kb on - strandat 1446.862 kb on - strandat 1446.869 kb on + strandat 1446.887 kb on - strandat 1446.888 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days
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1,445,918 + -0.1
1,445,960 + -0.8
1,446,001 + +2.6
1,446,044 - +0.7
1,446,046 - -0.4
1,446,046 - -2.8
1,446,046 - +1.5
1,446,046 - -1.0
1,446,076 - +0.1
1,446,076 - +0.2
1,446,116 + +2.2
1,446,174 - -0.1
1,446,191 + +1.5
1,446,197 + +1.6
1,446,234 - +0.1
1,446,234 - -2.2
1,446,247 + +0.5
1,446,348 + +0.4
1,446,353 - +0.9
1,446,412 - CCNA_01333 0.20 -1.3
1,446,495 + CCNA_01333 0.41 -0.0
1,446,577 + CCNA_01333 0.62 -0.6
1,446,577 + CCNA_01333 0.62 -0.0
1,446,577 + CCNA_01333 0.62 -0.3
1,446,649 - CCNA_01333 0.81 +1.1
1,446,649 - CCNA_01333 0.81 +0.8
1,446,649 - CCNA_01333 0.81 +2.3
1,446,675 + CCNA_01333 0.87 +2.5
1,446,714 + -1.8
1,446,769 - -1.1
1,446,769 - -0.6
1,446,813 - -0.4
1,446,861 - -1.6
1,446,862 - -1.5
1,446,869 + -2.1
1,446,887 - +0.8
1,446,888 - -0.3

Or see this region's nucleotide sequence