Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01287

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
1,411,989	-		CCNA_01285	0.39	+2.5
1,411,990	+		CCNA_01285	0.39	-0.7
1,412,049	-		CCNA_01285	0.45	-0.0
1,412,115	-		CCNA_01285	0.52	+0.3
1,412,115	-		CCNA_01285	0.52	+0.9
1,412,120	-		CCNA_01285	0.52	+1.0
1,412,144	-		CCNA_01285	0.55	+0.5
1,412,190	+		CCNA_01285	0.59	+1.8
1,412,190	+		CCNA_01285	0.59	+0.5
1,412,195	+		CCNA_01285	0.60	-1.2
1,412,198	-		CCNA_01285	0.60	+0.8
1,412,203	-		CCNA_01285	0.61	+0.6
1,412,220	-		CCNA_01285	0.63	+0.8
1,412,257	-		CCNA_01285	0.66	+1.3
1,412,257	-		CCNA_01285	0.66	-0.2
1,412,313	-		CCNA_01285	0.72	-2.5
1,412,324	-		CCNA_01285	0.73	-0.8
1,412,333	+		CCNA_01285	0.74	-1.5
1,412,382	+		CCNA_01285	0.79	-2.4
1,412,422	-		CCNA_01285	0.83	+1.6
1,412,431	+		CCNA_01285	0.84	+0.8
1,412,431	+		CCNA_01285	0.84	-0.7
1,412,448	-		CCNA_01285	0.86	+1.0
1,412,467	-		CCNA_01285	0.87	+1.0
1,412,501	+				+0.7
1,412,537	-				-1.2
1,412,591	+				-0.4
1,412,598	+				+1.4
1,412,601	-				+1.1
1,412,617	+				-1.4
1,412,625	-				+0.0
1,412,625	-				-2.2
1,412,649	-				-0.9
1,412,649	-				-0.4
1,412,671	-				+2.8
1,412,729	+		CCNA_01286	0.19	+0.5
1,412,729	+		CCNA_01286	0.19	+1.8
1,412,729	+		CCNA_01286	0.19	-2.1
1,412,737	-		CCNA_01286	0.22	-0.6
1,412,737	-		CCNA_01286	0.22	-0.9
1,412,737	-		CCNA_01286	0.22	-0.8
1,412,737	-		CCNA_01286	0.22	-0.6
1,412,777	+		CCNA_01286	0.38	+0.8
1,412,777	+		CCNA_01286	0.38	-0.6
1,412,785	-		CCNA_01286	0.41	+0.9
1,412,828	+		CCNA_01286	0.57	-0.2
1,412,828	+		CCNA_01286	0.57	-0.8
1,412,828	+		CCNA_01286	0.57	+0.6
1,412,828	+		CCNA_01286	0.57	-2.4
1,412,836	-		CCNA_01286	0.60	-3.1
1,412,836	-		CCNA_01286	0.60	+2.0
1,412,836	-		CCNA_01286	0.60	-1.6
1,412,836	-		CCNA_01286	0.60	+0.0
1,412,836	-		CCNA_01286	0.60	-0.5
1,412,836	-		CCNA_01286	0.60	+2.8
1,412,855	+		CCNA_01286	0.67	+0.6
1,412,868	+		CCNA_01286	0.72	-1.5
1,412,876	-		CCNA_01286	0.75	-0.4
1,412,915	+				-1.3
1,412,915	+				+2.4
1,412,923	-				+0.4
1,412,946	-				-0.1
1,412,958	+				-3.3
1,412,968	+				+1.3
1,412,968	+				-1.8
1,412,976	-				+0.2
1,412,976	-				-0.5
1,412,976	-				-0.1
1,412,981	+				-0.6
1,412,981	+				+1.2
1,412,989	-				-1.6
1,413,020	+				-1.1
1,413,033	-				+0.2
1,413,063	-		CCNA_01287	0.12	-1.9
1,413,088	+		CCNA_01287	0.15	-1.7
1,413,088	+		CCNA_01287	0.15	-1.8
1,413,096	-		CCNA_01287	0.16	-1.8
1,413,106	-		CCNA_01287	0.17	-1.6
1,413,156	+		CCNA_01287	0.22	-0.9
1,413,156	+		CCNA_01287	0.22	-0.4
1,413,156	+		CCNA_01287	0.22	+0.0
1,413,164	-		CCNA_01287	0.22	+1.8
1,413,208	+		CCNA_01287	0.27	+0.0
1,413,208	+		CCNA_01287	0.27	-0.8
1,413,293	+		CCNA_01287	0.35	+1.2
1,413,297	+		CCNA_01287	0.36	+0.8
1,413,306	-		CCNA_01287	0.37	+0.2
1,413,315	+		CCNA_01287	0.38	-1.2
1,413,324	-		CCNA_01287	0.39	-0.6
1,413,342	+		CCNA_01287	0.40	-1.5
1,413,365	+		CCNA_01287	0.43	+0.5
1,413,365	+		CCNA_01287	0.43	+2.8
1,413,415	-		CCNA_01287	0.48	-1.1
1,413,455	+		CCNA_01287	0.52	+0.8
1,413,455	+		CCNA_01287	0.52	-0.9
1,413,463	-		CCNA_01287	0.53	-0.2
1,413,470	+		CCNA_01287	0.53	+0.5
1,413,487	+		CCNA_01287	0.55	+0.2
1,413,544	-		CCNA_01287	0.61	-2.8
1,413,562	-		CCNA_01287	0.63	-1.0
1,413,658	-		CCNA_01287	0.72	+1.2
1,413,685	+		CCNA_01287	0.75	-2.9
1,413,714	+		CCNA_01287	0.78	+2.8
1,413,714	+		CCNA_01287	0.78	-2.2
1,413,722	-		CCNA_01287	0.79	-2.0
1,413,722	-		CCNA_01287	0.79	-1.4
1,413,727	-		CCNA_01287	0.79	+2.8
1,413,729	+		CCNA_01287	0.79	+1.2
1,413,729	+		CCNA_01287	0.79	-2.5
1,413,737	-		CCNA_01287	0.80	+0.0
1,413,746	-		CCNA_01287	0.81	-0.2
1,413,781	-		CCNA_01287	0.85	+1.2
1,413,802	+		CCNA_01287	0.87	+0.2
1,413,815	-		CCNA_01287	0.88	-1.3
1,413,815	-		CCNA_01287	0.88	-0.9
1,413,843	+				-0.4
1,413,889	+				-1.1
1,413,899	-				+0.2
1,413,911	-				+0.2
1,413,915	+				+1.2
1,414,066	-				-0.9
1,414,075	+				+0.8
1,414,090	+				+1.8
1,414,103	-				-1.9
1,414,141	+				-1.6
1,414,149	-				+1.3
1,414,158	-				-2.4
1,414,189	+		CCNA_01288	0.11	-0.5
1,414,194	+		CCNA_01288	0.12	-0.3
1,414,194	+		CCNA_01288	0.12	+0.1
1,414,194	+		CCNA_01288	0.12	+0.2
1,414,238	-		CCNA_01288	0.15	+0.2
1,414,264	+		CCNA_01288	0.18	-0.6
1,414,272	-		CCNA_01288	0.18	+0.1
1,414,298	+		CCNA_01288	0.20	-2.2
1,414,301	-		CCNA_01288	0.21	+1.8
1,414,313	+		CCNA_01288	0.22	-2.0
1,414,313	+		CCNA_01288	0.22	-2.5
1,414,321	-		CCNA_01288	0.22	-1.4
1,414,360	-		CCNA_01288	0.25	-0.7
1,414,452	-		CCNA_01288	0.33	-2.1
1,414,549	+		CCNA_01288	0.41	+1.2
1,414,559	+		CCNA_01288	0.42	-1.9
1,414,559	+		CCNA_01288	0.42	-0.2
1,414,559	+		CCNA_01288	0.42	-0.9
1,414,559	+		CCNA_01288	0.42	-1.0
1,414,559	+		CCNA_01288	0.42	-2.2
1,414,567	-		CCNA_01288	0.42	+0.8
1,414,567	-		CCNA_01288	0.42	-2.0
1,414,567	-		CCNA_01288	0.42	-1.1
1,414,567	-		CCNA_01288	0.42	-0.4
1,414,592	-		CCNA_01288	0.44	-0.5
1,414,608	-		CCNA_01288	0.46	-1.7
1,414,610	-		CCNA_01288	0.46	+2.8
1,414,614	-		CCNA_01288	0.46	+1.8
1,414,673	+		CCNA_01288	0.51	+6.0
1,414,681	-		CCNA_01288	0.52	-1.8
1,414,681	-		CCNA_01288	0.52	-2.8
1,414,686	-		CCNA_01288	0.52	-1.0
1,414,688	+		CCNA_01288	0.52	+1.2
1,414,696	-		CCNA_01288	0.53	+0.2
1,414,696	-		CCNA_01288	0.53	-0.2
1,414,696	-		CCNA_01288	0.53	-2.4
1,414,696	-		CCNA_01288	0.53	-0.9
1,414,709	+		CCNA_01288	0.54	-0.8
1,414,710	+		CCNA_01288	0.54	+0.3
1,414,719	-		CCNA_01288	0.55	-0.1
1,414,741	-		CCNA_01288	0.57	-1.7
1,414,768	+		CCNA_01288	0.59	-0.1
1,414,776	-		CCNA_01288	0.60	+2.5
1,414,786	-		CCNA_01288	0.60	+0.0
1,414,794	+		CCNA_01288	0.61	+2.6
1,414,797	-		CCNA_01288	0.61	-0.2
1,414,835	-		CCNA_01288	0.64	-0.9
1,414,857	+		CCNA_01288	0.66	+0.1
1,414,902	+		CCNA_01288	0.70	+0.6
1,414,910	-		CCNA_01288	0.71	-1.8