Experiment: PYE_noCalcium 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00890 and CCNA_00891 are separated by 121 nucleotides CCNA_00891 and CCNA_00892 are separated by 486 nucleotides
CCNA_00890: CCNA_00890 - poly(3-hydroxyalkanoate) depolymerase, at 967,847 to 968,767
_00890
CCNA_00891: CCNA_00891 - transporter, drug/metabolite exporter family, at 968,889 to 969,827
_00891
CCNA_00892: CCNA_00892 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 970,314 to 972,578
_00892
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 967.910 kb on + strand at 967.918 kb on - strand at 967.945 kb on - strand, within CCNA_00890 at 967.978 kb on + strand, within CCNA_00890 at 967.986 kb on - strand, within CCNA_00890 at 967.986 kb on - strand, within CCNA_00890 at 968.008 kb on - strand, within CCNA_00890 at 968.028 kb on - strand, within CCNA_00890 at 968.038 kb on - strand, within CCNA_00890 at 968.040 kb on + strand, within CCNA_00890 at 968.040 kb on + strand, within CCNA_00890 at 968.048 kb on - strand, within CCNA_00890 at 968.055 kb on + strand, within CCNA_00890 at 968.072 kb on - strand, within CCNA_00890 at 968.098 kb on + strand, within CCNA_00890 at 968.098 kb on + strand, within CCNA_00890 at 968.102 kb on + strand, within CCNA_00890 at 968.106 kb on - strand, within CCNA_00890 at 968.106 kb on - strand, within CCNA_00890 at 968.132 kb on + strand, within CCNA_00890 at 968.165 kb on - strand, within CCNA_00890 at 968.168 kb on + strand, within CCNA_00890 at 968.181 kb on - strand, within CCNA_00890 at 968.186 kb on + strand, within CCNA_00890 at 968.191 kb on + strand, within CCNA_00890 at 968.199 kb on - strand, within CCNA_00890 at 968.249 kb on + strand, within CCNA_00890 at 968.249 kb on + strand, within CCNA_00890 at 968.269 kb on + strand, within CCNA_00890 at 968.297 kb on - strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890 at 968.307 kb on + strand, within CCNA_00890 at 968.312 kb on + strand, within CCNA_00890 at 968.313 kb on + strand, within CCNA_00890 at 968.323 kb on + strand, within CCNA_00890 at 968.328 kb on + strand, within CCNA_00890 at 968.328 kb on + strand, within CCNA_00890 at 968.328 kb on + strand, within CCNA_00890 at 968.333 kb on + strand, within CCNA_00890 at 968.336 kb on - strand at 968.336 kb on - strand, within CCNA_00890 at 968.341 kb on - strand, within CCNA_00890 at 968.357 kb on - strand, within CCNA_00890 at 968.370 kb on - strand, within CCNA_00890 at 968.380 kb on - strand, within CCNA_00890 at 968.386 kb on + strand, within CCNA_00890 at 968.394 kb on + strand, within CCNA_00890 at 968.424 kb on - strand, within CCNA_00890 at 968.435 kb on - strand, within CCNA_00890 at 968.441 kb on + strand, within CCNA_00890 at 968.450 kb on - strand, within CCNA_00890 at 968.526 kb on - strand, within CCNA_00890 at 968.561 kb on + strand, within CCNA_00890 at 968.566 kb on - strand, within CCNA_00890 at 968.573 kb on + strand, within CCNA_00890 at 968.629 kb on - strand, within CCNA_00890 at 968.640 kb on - strand, within CCNA_00890 at 968.663 kb on - strand, within CCNA_00890 at 968.694 kb on - strand at 968.739 kb on + strand at 968.755 kb on + strand at 968.858 kb on - strand at 968.863 kb on - strand at 968.873 kb on + strand at 968.875 kb on + strand at 968.875 kb on + strand at 968.875 kb on + strand at 968.883 kb on - strand at 968.883 kb on - strand at 968.894 kb on - strand at 968.894 kb on - strand at 968.939 kb on - strand at 968.953 kb on - strand at 968.956 kb on + strand at 968.994 kb on + strand, within CCNA_00891 at 968.997 kb on + strand, within CCNA_00891 at 969.002 kb on + strand, within CCNA_00891 at 969.010 kb on - strand, within CCNA_00891 at 969.023 kb on + strand, within CCNA_00891 at 969.031 kb on - strand, within CCNA_00891 at 969.032 kb on - strand, within CCNA_00891 at 969.061 kb on + strand, within CCNA_00891 at 969.061 kb on + strand, within CCNA_00891 at 969.061 kb on + strand, within CCNA_00891 at 969.069 kb on - strand, within CCNA_00891 at 969.106 kb on + strand, within CCNA_00891 at 969.106 kb on + strand, within CCNA_00891 at 969.114 kb on - strand, within CCNA_00891 at 969.131 kb on - strand, within CCNA_00891 at 969.147 kb on - strand, within CCNA_00891 at 969.150 kb on + strand, within CCNA_00891 at 969.150 kb on + strand, within CCNA_00891 at 969.155 kb on + strand, within CCNA_00891 at 969.158 kb on - strand, within CCNA_00891 at 969.165 kb on + strand, within CCNA_00891 at 969.168 kb on - strand, within CCNA_00891 at 969.172 kb on + strand, within CCNA_00891 at 969.183 kb on + strand, within CCNA_00891 at 969.183 kb on + strand, within CCNA_00891 at 969.183 kb on + strand, within CCNA_00891 at 969.183 kb on + strand, within CCNA_00891 at 969.186 kb on - strand, within CCNA_00891 at 969.204 kb on + strand, within CCNA_00891 at 969.220 kb on + strand, within CCNA_00891 at 969.220 kb on + strand, within CCNA_00891 at 969.233 kb on - strand, within CCNA_00891 at 969.233 kb on - strand, within CCNA_00891 at 969.251 kb on + strand, within CCNA_00891 at 969.251 kb on + strand, within CCNA_00891 at 969.258 kb on + strand, within CCNA_00891 at 969.258 kb on + strand at 969.258 kb on + strand, within CCNA_00891 at 969.259 kb on - strand, within CCNA_00891 at 969.259 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.266 kb on - strand, within CCNA_00891 at 969.272 kb on + strand, within CCNA_00891 at 969.300 kb on + strand, within CCNA_00891 at 969.310 kb on + strand, within CCNA_00891 at 969.353 kb on + strand, within CCNA_00891 at 969.361 kb on - strand, within CCNA_00891 at 969.398 kb on + strand, within CCNA_00891 at 969.398 kb on + strand, within CCNA_00891 at 969.482 kb on - strand, within CCNA_00891 at 969.487 kb on - strand, within CCNA_00891 at 969.503 kb on - strand at 969.507 kb on - strand, within CCNA_00891 at 969.509 kb on + strand, within CCNA_00891 at 969.519 kb on + strand, within CCNA_00891 at 969.527 kb on - strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.587 kb on - strand, within CCNA_00891 at 969.693 kb on + strand, within CCNA_00891 at 969.704 kb on + strand, within CCNA_00891 at 969.704 kb on + strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.762 kb on + strand at 969.762 kb on + strand at 969.773 kb on + strand at 969.780 kb on + strand at 969.781 kb on - strand at 969.782 kb on + strand at 969.782 kb on + strand at 969.812 kb on + strand at 969.836 kb on + strand at 969.893 kb on + strand at 969.994 kb on + strand at 969.994 kb on + strand at 969.994 kb on + strand at 970.002 kb on - strand at 970.014 kb on - strand at 970.029 kb on + strand at 970.037 kb on + strand at 970.042 kb on + strand at 970.050 kb on - strand at 970.050 kb on - strand at 970.100 kb on + strand at 970.100 kb on + strand at 970.100 kb on - strand at 970.100 kb on - strand at 970.100 kb on - strand at 970.100 kb on - strand at 970.110 kb on - strand at 970.112 kb on + strand at 970.117 kb on + strand at 970.120 kb on - strand at 970.125 kb on - strand at 970.125 kb on - strand at 970.132 kb on + strand at 970.140 kb on - strand at 970.191 kb on - strand at 970.202 kb on - strand at 970.229 kb on + strand at 970.241 kb on + strand at 970.246 kb on + strand at 970.246 kb on + strand at 970.246 kb on + strand at 970.246 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.283 kb on + strand at 970.299 kb on - strand at 970.398 kb on - strand at 970.400 kb on + strand at 970.418 kb on + strand at 970.766 kb on + strand, within CCNA_00892 at 970.766 kb on + strand, within CCNA_00892
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days remove 967,910 + +0.8 967,918 - +1.1 967,945 - CCNA_00890 0.11 -0.6 967,978 + CCNA_00890 0.14 +1.3 967,986 - CCNA_00890 0.15 -1.0 967,986 - CCNA_00890 0.15 -2.5 968,008 - CCNA_00890 0.17 -0.5 968,028 - CCNA_00890 0.20 +1.4 968,038 - CCNA_00890 0.21 -1.2 968,040 + CCNA_00890 0.21 -2.2 968,040 + CCNA_00890 0.21 +1.7 968,048 - CCNA_00890 0.22 -0.8 968,055 + CCNA_00890 0.23 +0.4 968,072 - CCNA_00890 0.24 -2.2 968,098 + CCNA_00890 0.27 +0.7 968,098 + CCNA_00890 0.27 +2.3 968,102 + CCNA_00890 0.28 -3.1 968,106 - CCNA_00890 0.28 +1.4 968,106 - CCNA_00890 0.28 +0.1 968,132 + CCNA_00890 0.31 +0.2 968,165 - CCNA_00890 0.35 -1.9 968,168 + CCNA_00890 0.35 -0.4 968,181 - CCNA_00890 0.36 +0.7 968,186 + CCNA_00890 0.37 -0.6 968,191 + CCNA_00890 0.37 +1.4 968,199 - CCNA_00890 0.38 -0.6 968,249 + CCNA_00890 0.44 -0.1 968,249 + CCNA_00890 0.44 +0.8 968,269 + CCNA_00890 0.46 +2.5 968,297 - CCNA_00890 0.49 -0.9 968,307 + CCNA_00890 0.50 -0.4 968,307 + CCNA_00890 0.50 -0.7 968,307 + CCNA_00890 0.50 -0.7 968,312 + CCNA_00890 0.50 -2.0 968,313 + CCNA_00890 0.51 -0.3 968,323 + CCNA_00890 0.52 +1.0 968,328 + CCNA_00890 0.52 -2.3 968,328 + CCNA_00890 0.52 +0.2 968,328 + CCNA_00890 0.52 +1.1 968,333 + CCNA_00890 0.53 -1.4 968,336 - +0.7 968,336 - CCNA_00890 0.53 +1.3 968,341 - CCNA_00890 0.54 +2.6 968,357 - CCNA_00890 0.55 -1.6 968,370 - CCNA_00890 0.57 -0.6 968,380 - CCNA_00890 0.58 -2.1 968,386 + CCNA_00890 0.59 -0.5 968,394 + CCNA_00890 0.59 -2.4 968,424 - CCNA_00890 0.63 -3.5 968,435 - CCNA_00890 0.64 -2.3 968,441 + CCNA_00890 0.64 -0.3 968,450 - CCNA_00890 0.65 +1.2 968,526 - CCNA_00890 0.74 -3.2 968,561 + CCNA_00890 0.78 -0.7 968,566 - CCNA_00890 0.78 -1.4 968,573 + CCNA_00890 0.79 -0.3 968,629 - CCNA_00890 0.85 +0.9 968,640 - CCNA_00890 0.86 -0.3 968,663 - CCNA_00890 0.89 +0.1 968,694 - -0.0 968,739 + -0.1 968,755 + -2.3 968,858 - +2.7 968,863 - +2.9 968,873 + -0.8 968,875 + -1.6 968,875 + -0.8 968,875 + +0.0 968,883 - -2.3 968,883 - +0.7 968,894 - -0.2 968,894 - +2.2 968,939 - -3.7 968,953 - -0.7 968,956 + -1.7 968,994 + CCNA_00891 0.11 -0.1 968,997 + CCNA_00891 0.12 -0.7 969,002 + CCNA_00891 0.12 +0.6 969,010 - CCNA_00891 0.13 -4.1 969,023 + CCNA_00891 0.14 -0.6 969,031 - CCNA_00891 0.15 -1.4 969,032 - CCNA_00891 0.15 -0.3 969,061 + CCNA_00891 0.18 -3.0 969,061 + CCNA_00891 0.18 -1.6 969,061 + CCNA_00891 0.18 -2.0 969,069 - CCNA_00891 0.19 -2.9 969,106 + CCNA_00891 0.23 -1.5 969,106 + CCNA_00891 0.23 -3.7 969,114 - CCNA_00891 0.24 -1.8 969,131 - CCNA_00891 0.26 +2.7 969,147 - CCNA_00891 0.27 -2.4 969,150 + CCNA_00891 0.28 -0.4 969,150 + CCNA_00891 0.28 -1.6 969,155 + CCNA_00891 0.28 -0.3 969,158 - CCNA_00891 0.29 -2.6 969,165 + CCNA_00891 0.29 -2.5 969,168 - CCNA_00891 0.30 -2.0 969,172 + CCNA_00891 0.30 -1.8 969,183 + CCNA_00891 0.31 +0.3 969,183 + CCNA_00891 0.31 -1.5 969,183 + CCNA_00891 0.31 -2.4 969,183 + CCNA_00891 0.31 +2.7 969,186 - CCNA_00891 0.32 +0.4 969,204 + CCNA_00891 0.34 +1.1 969,220 + CCNA_00891 0.35 -1.5 969,220 + CCNA_00891 0.35 +0.2 969,233 - CCNA_00891 0.37 -1.6 969,233 - CCNA_00891 0.37 -3.6 969,251 + CCNA_00891 0.39 -2.8 969,251 + CCNA_00891 0.39 -2.5 969,258 + CCNA_00891 0.39 -0.3 969,258 + +0.2 969,258 + CCNA_00891 0.39 -1.2 969,259 - CCNA_00891 0.39 -0.2 969,259 - CCNA_00891 0.39 -2.6 969,266 - CCNA_00891 0.40 -1.0 969,266 - CCNA_00891 0.40 -0.6 969,266 - CCNA_00891 0.40 -1.2 969,266 - CCNA_00891 0.40 -1.0 969,266 - CCNA_00891 0.40 +0.6 969,266 - CCNA_00891 0.40 +1.7 969,272 + CCNA_00891 0.41 -2.7 969,300 + CCNA_00891 0.44 -1.6 969,310 + CCNA_00891 0.45 -0.6 969,353 + CCNA_00891 0.49 +0.7 969,361 - CCNA_00891 0.50 +0.0 969,398 + CCNA_00891 0.54 -1.2 969,398 + CCNA_00891 0.54 +1.7 969,482 - CCNA_00891 0.63 -3.1 969,487 - CCNA_00891 0.64 -0.8 969,503 - +2.7 969,507 - CCNA_00891 0.66 +1.6 969,509 + CCNA_00891 0.66 +0.7 969,519 + CCNA_00891 0.67 -2.6 969,527 - CCNA_00891 0.68 -2.9 969,572 + CCNA_00891 0.73 -1.7 969,572 + CCNA_00891 0.73 +0.9 969,572 + CCNA_00891 0.73 -1.4 969,572 + CCNA_00891 0.73 -2.6 969,572 + CCNA_00891 0.73 -1.6 969,580 - CCNA_00891 0.74 -2.5 969,580 - CCNA_00891 0.74 +0.7 969,580 - CCNA_00891 0.74 +0.4 969,580 - CCNA_00891 0.74 -1.8 969,587 - CCNA_00891 0.74 +0.4 969,693 + CCNA_00891 0.86 -1.4 969,704 + CCNA_00891 0.87 -1.3 969,704 + CCNA_00891 0.87 -0.1 969,712 - CCNA_00891 0.88 +0.2 969,712 - CCNA_00891 0.88 +0.7 969,712 - CCNA_00891 0.88 -1.9 969,712 - CCNA_00891 0.88 -1.6 969,712 - CCNA_00891 0.88 -2.0 969,762 + -1.7 969,762 + +1.7 969,773 + +0.7 969,780 + +1.7 969,781 - -3.2 969,782 + -1.1 969,782 + -0.8 969,812 + -0.7 969,836 + -3.5 969,893 + +1.5 969,994 + -0.8 969,994 + -2.0 969,994 + -1.1 970,002 - -1.6 970,014 - +0.7 970,029 + +1.4 970,037 + -0.0 970,042 + +1.5 970,050 - -2.9 970,050 - -2.7 970,100 + +1.2 970,100 + +0.7 970,100 - +0.2 970,100 - -0.4 970,100 - +1.2 970,100 - -1.8 970,110 - -1.2 970,112 + -2.3 970,117 + +0.2 970,120 - -3.3 970,125 - -2.4 970,125 - +1.7 970,132 + +0.7 970,140 - -2.1 970,191 - -1.5 970,202 - -1.5 970,229 + -2.2 970,241 + +0.2 970,246 + -2.0 970,246 + -1.4 970,246 + -1.1 970,246 + -2.6 970,271 + -1.8 970,271 + +1.2 970,271 + -1.2 970,271 + -0.7 970,271 + +0.5 970,271 + -0.4 970,271 + -0.8 970,279 - +2.7 970,279 - +2.7 970,279 - +0.2 970,283 + +1.3 970,299 - +2.7 970,398 - +1.2 970,400 + +2.7 970,418 + +0.2 970,766 + CCNA_00892 0.20 -1.8 970,766 + CCNA_00892 0.20 -2.6
Or see this region's nucleotide sequence