Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00706

Experiment: PYE_noCalcium 30C survival rep2 28 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00703 and CCNA_00704 are separated by 42 nucleotidesCCNA_00704 and CCNA_00705 are separated by 151 nucleotidesCCNA_00705 and CCNA_00706 are separated by 274 nucleotidesCCNA_00706 and CCNA_00707 are separated by 99 nucleotides CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633 _00703 CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873 _00704 CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315 _00705 CCNA_00706: CCNA_00706 - hypothetical protein, at 763,590 to 764,003 _00706 CCNA_00707: CCNA_00707 - hypothetical protein, at 764,103 to 765,185 _00707 Position (kb) 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 762.590 kb on - strand, within CCNA_00703at 762.590 kb on - strand, within CCNA_00703at 762.632 kb on + strandat 762.669 kb on - strandat 762.696 kb on + strand, within CCNA_00704at 762.696 kb on + strand, within CCNA_00704at 762.704 kb on - strand, within CCNA_00704at 762.704 kb on - strand, within CCNA_00704at 762.704 kb on - strand, within CCNA_00704at 762.729 kb on + strand, within CCNA_00704at 762.836 kb on - strand, within CCNA_00704at 762.847 kb on - strand, within CCNA_00704at 762.847 kb on - strand, within CCNA_00704at 762.902 kb on - strandat 762.902 kb on - strandat 762.906 kb on + strandat 762.906 kb on + strandat 762.916 kb on + strandat 762.916 kb on + strandat 762.916 kb on + strandat 762.924 kb on - strandat 762.951 kb on + strandat 762.951 kb on + strandat 762.959 kb on - strandat 762.959 kb on - strandat 762.959 kb on - strandat 762.959 kb on - strandat 762.959 kb on - strandat 763.010 kb on + strandat 763.018 kb on - strandat 763.064 kb on + strand, within CCNA_00705at 763.072 kb on - strand, within CCNA_00705at 763.072 kb on - strand, within CCNA_00705at 763.072 kb on - strand, within CCNA_00705at 763.105 kb on - strand, within CCNA_00705at 763.125 kb on + strand, within CCNA_00705at 763.183 kb on - strand, within CCNA_00705at 763.263 kb on + strand, within CCNA_00705at 763.273 kb on + strand, within CCNA_00705at 763.281 kb on - strand, within CCNA_00705at 763.300 kb on - strandat 763.305 kb on - strandat 763.322 kb on - strandat 763.322 kb on - strandat 763.324 kb on - strandat 763.342 kb on + strandat 763.373 kb on - strandat 763.394 kb on + strandat 763.397 kb on - strandat 763.420 kb on - strandat 763.502 kb on - strandat 763.513 kb on - strandat 763.575 kb on - strandat 763.580 kb on + strandat 763.580 kb on + strandat 763.581 kb on + strandat 763.582 kb on - strandat 763.596 kb on - strandat 763.613 kb on - strandat 763.623 kb on + strandat 763.624 kb on + strandat 763.624 kb on + strandat 763.626 kb on - strandat 763.631 kb on - strandat 763.631 kb on - strandat 763.632 kb on - strand, within CCNA_00706at 763.649 kb on + strand, within CCNA_00706at 763.657 kb on - strand, within CCNA_00706at 763.676 kb on - strand, within CCNA_00706at 763.676 kb on - strand, within CCNA_00706at 763.676 kb on - strand, within CCNA_00706at 763.680 kb on + strand, within CCNA_00706at 763.707 kb on + strand, within CCNA_00706at 763.707 kb on + strand, within CCNA_00706at 763.720 kb on - strand, within CCNA_00706at 763.720 kb on - strand, within CCNA_00706at 763.744 kb on + strand, within CCNA_00706at 763.773 kb on - strand, within CCNA_00706at 763.773 kb on - strand, within CCNA_00706at 763.782 kb on - strand, within CCNA_00706at 763.829 kb on - strand, within CCNA_00706at 763.905 kb on + strand, within CCNA_00706at 763.922 kb on + strand, within CCNA_00706at 763.925 kb on - strand, within CCNA_00706at 763.953 kb on - strand, within CCNA_00706at 763.970 kb on - strandat 764.101 kb on + strandat 764.101 kb on + strandat 764.101 kb on + strandat 764.109 kb on - strandat 764.109 kb on - strandat 764.114 kb on - strandat 764.183 kb on - strandat 764.190 kb on - strandat 764.226 kb on + strand, within CCNA_00707at 764.247 kb on + strand, within CCNA_00707at 764.247 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.262 kb on + strand, within CCNA_00707at 764.267 kb on + strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.270 kb on - strand, within CCNA_00707at 764.274 kb on + strandat 764.275 kb on - strand, within CCNA_00707at 764.281 kb on + strand, within CCNA_00707at 764.281 kb on + strand, within CCNA_00707at 764.304 kb on - strand, within CCNA_00707at 764.351 kb on - strand, within CCNA_00707at 764.356 kb on - strand, within CCNA_00707at 764.396 kb on + strand, within CCNA_00707at 764.417 kb on - strand, within CCNA_00707at 764.456 kb on - strand, within CCNA_00707at 764.477 kb on - strand, within CCNA_00707at 764.494 kb on + strand, within CCNA_00707at 764.502 kb on - strand, within CCNA_00707at 764.502 kb on - strand, within CCNA_00707at 764.600 kb on - strand, within CCNA_00707at 764.600 kb on - strand, within CCNA_00707at 764.613 kb on - strandat 764.620 kb on + strand, within CCNA_00707at 764.628 kb on + strand, within CCNA_00707at 764.646 kb on - strand, within CCNA_00707at 764.717 kb on - strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.722 kb on + strand, within CCNA_00707at 764.730 kb on - strand, within CCNA_00707at 764.755 kb on + strand, within CCNA_00707at 764.766 kb on + strand, within CCNA_00707at 764.868 kb on - strand, within CCNA_00707at 764.878 kb on - strand, within CCNA_00707at 764.883 kb on + strand, within CCNA_00707at 764.956 kb on - strand, within CCNA_00707at 764.958 kb on + strand, within CCNA_00707at 764.958 kb on + strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.966 kb on - strand, within CCNA_00707at 764.971 kb on - strand, within CCNA_00707at 764.971 kb on - strand, within CCNA_00707at 764.982 kb on + strand, within CCNA_00707at 764.994 kb on + strand, within CCNA_00707

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days
remove
762,590 - CCNA_00703 0.79 -0.1
762,590 - CCNA_00703 0.79 +0.4
762,632 + +0.8
762,669 - -0.1
762,696 + CCNA_00704 0.10 +1.4
762,696 + CCNA_00704 0.10 -1.5
762,704 - CCNA_00704 0.14 -2.3
762,704 - CCNA_00704 0.14 -3.3
762,704 - CCNA_00704 0.14 -0.7
762,729 + CCNA_00704 0.27 +0.8
762,836 - CCNA_00704 0.81 +0.9
762,847 - CCNA_00704 0.86 -1.8
762,847 - CCNA_00704 0.86 -0.7
762,902 - -2.4
762,902 - +4.4
762,906 + -0.4
762,906 + +0.4
762,916 + +0.6
762,916 + +1.1
762,916 + +1.3
762,924 - -1.0
762,951 + +0.6
762,951 + +1.7
762,959 - -1.2
762,959 - -2.8
762,959 - -0.4
762,959 - +2.5
762,959 - -0.8
763,010 + -0.2
763,018 - -0.5
763,064 + CCNA_00705 0.13 +2.8
763,072 - CCNA_00705 0.16 -0.8
763,072 - CCNA_00705 0.16 +0.5
763,072 - CCNA_00705 0.16 -0.7
763,105 - CCNA_00705 0.27 +1.6
763,125 + CCNA_00705 0.34 -0.9
763,183 - CCNA_00705 0.54 -0.4
763,263 + CCNA_00705 0.82 +0.2
763,273 + CCNA_00705 0.85 -1.6
763,281 - CCNA_00705 0.88 +0.6
763,300 - -0.1
763,305 - -3.1
763,322 - +0.2
763,322 - -0.5
763,324 - +0.8
763,342 + -0.3
763,373 - +0.1
763,394 + -1.3
763,397 - +0.1
763,420 - -0.1
763,502 - +1.2
763,513 - -0.4
763,575 - +0.8
763,580 + +1.7
763,580 + -2.4
763,581 + +1.6
763,582 - +1.1
763,596 - -1.9
763,613 - -0.3
763,623 + +0.2
763,624 + +1.1
763,624 + +0.5
763,626 - -0.1
763,631 - +0.7
763,631 - -0.8
763,632 - CCNA_00706 0.10 +1.6
763,649 + CCNA_00706 0.14 -1.0
763,657 - CCNA_00706 0.16 +1.0
763,676 - CCNA_00706 0.21 +0.9
763,676 - CCNA_00706 0.21 +1.7
763,676 - CCNA_00706 0.21 +1.9
763,680 + CCNA_00706 0.22 +0.9
763,707 + CCNA_00706 0.28 -2.3
763,707 + CCNA_00706 0.28 -0.5
763,720 - CCNA_00706 0.31 +2.8
763,720 - CCNA_00706 0.31 +1.8
763,744 + CCNA_00706 0.37 +0.5
763,773 - CCNA_00706 0.44 +0.8
763,773 - CCNA_00706 0.44 +2.8
763,782 - CCNA_00706 0.46 +1.0
763,829 - CCNA_00706 0.58 +1.4
763,905 + CCNA_00706 0.76 +0.7
763,922 + CCNA_00706 0.80 -0.5
763,925 - CCNA_00706 0.81 -1.4
763,953 - CCNA_00706 0.88 +2.8
763,970 - -0.2
764,101 + -0.4
764,101 + -1.8
764,101 + -0.2
764,109 - -0.1
764,109 - -1.6
764,114 - -0.4
764,183 - +0.7
764,190 - +0.3
764,226 + CCNA_00707 0.11 -0.2
764,247 + CCNA_00707 0.13 -0.7
764,247 + CCNA_00707 0.13 +1.5
764,262 + CCNA_00707 0.15 +0.0
764,262 + CCNA_00707 0.15 +3.6
764,262 + CCNA_00707 0.15 -1.3
764,262 + CCNA_00707 0.15 -0.8
764,262 + CCNA_00707 0.15 -1.4
764,262 + CCNA_00707 0.15 -1.0
764,262 + CCNA_00707 0.15 +0.5
764,267 + CCNA_00707 0.15 -0.6
764,270 - CCNA_00707 0.15 +1.6
764,270 - CCNA_00707 0.15 +0.1
764,270 - CCNA_00707 0.15 -0.1
764,270 - CCNA_00707 0.15 -0.6
764,270 - CCNA_00707 0.15 -0.3
764,274 + +0.5
764,275 - CCNA_00707 0.16 -0.4
764,281 + CCNA_00707 0.16 -2.2
764,281 + CCNA_00707 0.16 -0.7
764,304 - CCNA_00707 0.19 -0.1
764,351 - CCNA_00707 0.23 +1.5
764,356 - CCNA_00707 0.23 +1.5
764,396 + CCNA_00707 0.27 -1.7
764,417 - CCNA_00707 0.29 +0.8
764,456 - CCNA_00707 0.33 -1.4
764,477 - CCNA_00707 0.35 +0.3
764,494 + CCNA_00707 0.36 -0.3
764,502 - CCNA_00707 0.37 +0.6
764,502 - CCNA_00707 0.37 +0.6
764,600 - CCNA_00707 0.46 +0.2
764,600 - CCNA_00707 0.46 -0.1
764,613 - -0.4
764,620 + CCNA_00707 0.48 +0.2
764,628 + CCNA_00707 0.48 -0.5
764,646 - CCNA_00707 0.50 +2.2
764,717 - CCNA_00707 0.57 +0.7
764,722 + CCNA_00707 0.57 +3.6
764,722 + CCNA_00707 0.57 +3.8
764,722 + CCNA_00707 0.57 +0.5
764,722 + CCNA_00707 0.57 +0.6
764,730 - CCNA_00707 0.58 +1.8
764,755 + CCNA_00707 0.60 -1.9
764,766 + CCNA_00707 0.61 +0.6
764,868 - CCNA_00707 0.71 +0.1
764,878 - CCNA_00707 0.72 -0.2
764,883 + CCNA_00707 0.72 +1.4
764,956 - CCNA_00707 0.79 +0.1
764,958 + CCNA_00707 0.79 +3.8
764,958 + CCNA_00707 0.79 -1.4
764,966 - CCNA_00707 0.80 +1.3
764,966 - CCNA_00707 0.80 +4.8
764,966 - CCNA_00707 0.80 +0.6
764,971 - CCNA_00707 0.80 +1.9
764,971 - CCNA_00707 0.80 +0.6
764,982 + CCNA_00707 0.81 +1.8
764,994 + CCNA_00707 0.82 -1.8

Or see this region's nucleotide sequence