Experiment: PYE_noCalcium 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00464 and CCNA_00465 are separated by 242 nucleotides CCNA_00465 and CCNA_00466 are separated by 157 nucleotides
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
CCNA_00465: CCNA_00465 - UDP-galactopyranose mutase, at 477,921 to 479,033
_00465
CCNA_00466: CCNA_00466 - glycosyltransferase, at 479,191 to 480,435
_00466
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 477.017 kb on + strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.246 kb on + strand at 477.254 kb on - strand at 477.280 kb on + strand at 477.280 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.306 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.324 kb on - strand at 477.332 kb on + strand at 477.348 kb on + strand at 477.370 kb on - strand at 477.390 kb on - strand at 477.390 kb on - strand at 477.474 kb on + strand at 477.474 kb on + strand at 477.474 kb on + strand at 477.482 kb on - strand at 477.492 kb on + strand at 477.493 kb on - strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.495 kb on + strand at 477.503 kb on + strand at 477.503 kb on - strand at 477.503 kb on - strand at 477.503 kb on - strand at 477.506 kb on + strand at 477.506 kb on + strand at 477.517 kb on - strand at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.559 kb on - strand, within CCNA_00464 at 477.565 kb on + strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.579 kb on - strand, within CCNA_00464 at 477.583 kb on + strand, within CCNA_00464 at 477.584 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.604 kb on - strand, within CCNA_00464 at 477.624 kb on + strand, within CCNA_00464 at 477.659 kb on - strand, within CCNA_00464 at 477.665 kb on + strand at 477.682 kb on + strand at 477.692 kb on - strand at 477.794 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.835 kb on - strand at 477.850 kb on + strand at 477.858 kb on - strand at 477.858 kb on - strand at 477.860 kb on + strand at 477.868 kb on - strand at 477.895 kb on + strand at 477.903 kb on - strand at 479.017 kb on - strand at 479.018 kb on + strand at 479.028 kb on + strand at 479.093 kb on - strand at 479.110 kb on - strand at 479.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days remove 477,017 + +1.4 477,212 + +1.9 477,212 + -0.3 477,246 + -0.3 477,246 + -1.1 477,246 + +1.3 477,254 - -1.3 477,280 + +4.1 477,280 + -2.4 477,297 - +0.2 477,304 + -2.5 477,304 + -1.6 477,304 + -0.1 477,304 + -1.2 477,304 + -1.8 477,304 + -1.0 477,306 + +0.7 477,312 - +2.6 477,312 - +0.6 477,312 - -0.4 477,312 - +2.6 477,324 - +2.6 477,332 + +1.1 477,348 + -0.9 477,370 - +2.6 477,390 - +2.6 477,390 - +2.6 477,474 + +1.6 477,474 + +0.8 477,474 + +0.0 477,482 - -0.8 477,492 + -1.3 477,493 - -0.6 477,495 + -0.4 477,495 + -0.9 477,495 + +1.3 477,495 + +1.2 477,495 + +0.8 477,503 + -0.9 477,503 - -1.7 477,503 - -0.9 477,503 - -0.9 477,506 + +1.0 477,506 + +0.5 477,517 - +1.0 477,551 + CCNA_00464 0.22 +0.8 477,556 + CCNA_00464 0.25 -1.2 477,558 - CCNA_00464 0.27 +2.0 477,559 - CCNA_00464 0.27 -0.6 477,565 + CCNA_00464 0.31 +1.3 477,574 - CCNA_00464 0.36 -0.4 477,576 + CCNA_00464 0.38 -1.4 477,576 + CCNA_00464 0.38 +1.3 477,576 + CCNA_00464 0.38 +1.6 477,579 - CCNA_00464 0.39 +1.2 477,583 + CCNA_00464 0.42 +0.3 477,584 + CCNA_00464 0.42 -0.8 477,584 - CCNA_00464 0.42 -0.3 477,584 - CCNA_00464 0.42 +1.0 477,584 - CCNA_00464 0.42 +0.6 477,584 - CCNA_00464 0.42 -1.4 477,604 - CCNA_00464 0.55 -0.3 477,624 + CCNA_00464 0.67 +3.7 477,659 - CCNA_00464 0.88 +0.6 477,665 + -0.1 477,682 + +0.7 477,692 - -1.6 477,794 + +3.3 477,827 + +1.0 477,827 + +0.1 477,827 + -0.3 477,827 + +1.0 477,835 - +2.6 477,850 + +0.6 477,858 - +0.6 477,858 - +0.6 477,860 + +0.1 477,868 - -1.1 477,895 + +1.2 477,903 - +1.0 479,017 - -0.6 479,018 + +2.2 479,028 + +2.1 479,093 - +2.6 479,110 - +1.2 479,178 + +1.6
Or see this region's nucleotide sequence