Experiment: PYE_noCalcium 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00437 and CCNA_00438 are separated by 211 nucleotides CCNA_00438 and CCNA_00439 are separated by 296 nucleotides CCNA_00439 and CCNA_00440 overlap by 1 nucleotides CCNA_00440 and CCNA_00441 overlap by 4 nucleotides CCNA_00441 and CCNA_00442 are separated by 69 nucleotides
CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677
_00437
CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200
_00438
CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518
_00439
CCNA_00440: CCNA_00440 - STAS domain protein, at 447,518 to 447,805
_00440
CCNA_00441: CCNA_00441 - chemotaxis receiver domain protein cheYI, at 447,802 to 448,167
_00441
CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525
_00442
Position (kb) 445
446
447
448 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 444.503 kb on + strand, within CCNA_00437 at 444.511 kb on - strand, within CCNA_00437 at 444.513 kb on + strand, within CCNA_00437 at 444.520 kb on + strand at 444.530 kb on - strand at 444.541 kb on - strand at 444.686 kb on + strand at 444.694 kb on - strand at 444.708 kb on - strand at 444.708 kb on - strand at 444.710 kb on - strand at 444.715 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.738 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.758 kb on + strand at 444.766 kb on + strand at 444.766 kb on - strand at 444.827 kb on - strand at 444.827 kb on - strand at 444.832 kb on - strand at 444.848 kb on - strand at 444.857 kb on - strand at 444.858 kb on - strand at 444.985 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.006 kb on + strand, within CCNA_00438 at 445.013 kb on + strand, within CCNA_00438 at 445.014 kb on - strand, within CCNA_00438 at 445.021 kb on - strand, within CCNA_00438 at 445.051 kb on - strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.055 kb on + strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.063 kb on - strand, within CCNA_00438 at 445.083 kb on - strand, within CCNA_00438 at 445.092 kb on + strand, within CCNA_00438 at 445.108 kb on - strand, within CCNA_00438 at 445.116 kb on - strand, within CCNA_00438 at 445.141 kb on + strand, within CCNA_00438 at 445.202 kb on - strand at 445.202 kb on - strand at 445.359 kb on - strand at 445.376 kb on - strand at 445.378 kb on + strand at 445.491 kb on + strand at 445.499 kb on - strand at 445.499 kb on - strand at 445.519 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.526 kb on + strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.534 kb on - strand at 445.567 kb on + strand at 445.575 kb on - strand at 445.599 kb on - strand at 445.611 kb on + strand at 445.650 kb on + strand at 445.684 kb on - strand at 445.691 kb on - strand at 445.774 kb on + strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.782 kb on - strand, within CCNA_00439 at 445.790 kb on + strand, within CCNA_00439 at 445.832 kb on + strand, within CCNA_00439 at 445.840 kb on - strand, within CCNA_00439 at 445.883 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.906 kb on + strand, within CCNA_00439 at 445.932 kb on - strand, within CCNA_00439 at 445.952 kb on - strand, within CCNA_00439 at 445.955 kb on + strand, within CCNA_00439 at 445.962 kb on + strand, within CCNA_00439 at 445.975 kb on - strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 445.999 kb on + strand, within CCNA_00439 at 446.024 kb on - strand, within CCNA_00439 at 446.045 kb on + strand, within CCNA_00439 at 446.051 kb on + strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.070 kb on - strand, within CCNA_00439 at 446.090 kb on + strand, within CCNA_00439 at 446.096 kb on + strand, within CCNA_00439 at 446.103 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.108 kb on + strand, within CCNA_00439 at 446.121 kb on - strand, within CCNA_00439 at 446.147 kb on + strand, within CCNA_00439 at 446.162 kb on + strand, within CCNA_00439 at 446.169 kb on + strand, within CCNA_00439 at 446.240 kb on + strand, within CCNA_00439 at 446.247 kb on + strand, within CCNA_00439 at 446.248 kb on - strand, within CCNA_00439 at 446.252 kb on + strand, within CCNA_00439 at 446.255 kb on - strand, within CCNA_00439 at 446.284 kb on + strand, within CCNA_00439 at 446.310 kb on + strand, within CCNA_00439 at 446.312 kb on + strand, within CCNA_00439 at 446.312 kb on + strand, within CCNA_00439 at 446.344 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.349 kb on - strand, within CCNA_00439 at 446.381 kb on + strand, within CCNA_00439 at 446.389 kb on - strand, within CCNA_00439 at 446.402 kb on + strand, within CCNA_00439 at 446.410 kb on - strand, within CCNA_00439 at 446.451 kb on + strand, within CCNA_00439 at 446.473 kb on + strand, within CCNA_00439 at 446.483 kb on + strand, within CCNA_00439 at 446.483 kb on + strand, within CCNA_00439 at 446.493 kb on + strand, within CCNA_00439 at 446.550 kb on + strand, within CCNA_00439 at 446.552 kb on + strand, within CCNA_00439 at 446.569 kb on - strand, within CCNA_00439 at 446.570 kb on - strand, within CCNA_00439 at 446.668 kb on + strand, within CCNA_00439 at 446.668 kb on + strand, within CCNA_00439 at 446.673 kb on + strand, within CCNA_00439 at 446.718 kb on - strand, within CCNA_00439 at 446.746 kb on - strand, within CCNA_00439 at 446.765 kb on - strand, within CCNA_00439 at 446.822 kb on - strand, within CCNA_00439 at 446.824 kb on + strand, within CCNA_00439 at 446.829 kb on + strand, within CCNA_00439 at 446.837 kb on - strand, within CCNA_00439 at 446.847 kb on + strand, within CCNA_00439 at 446.862 kb on + strand, within CCNA_00439 at 446.865 kb on - strand, within CCNA_00439 at 446.865 kb on - strand, within CCNA_00439 at 446.887 kb on - strand, within CCNA_00439 at 446.944 kb on - strand, within CCNA_00439 at 446.951 kb on + strand, within CCNA_00439 at 446.968 kb on - strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 446.994 kb on + strand, within CCNA_00439 at 447.002 kb on - strand, within CCNA_00439 at 447.006 kb on + strand, within CCNA_00439 at 447.033 kb on - strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.035 kb on + strand, within CCNA_00439 at 447.042 kb on + strand, within CCNA_00439 at 447.043 kb on - strand, within CCNA_00439 at 447.043 kb on - strand, within CCNA_00439 at 447.050 kb on + strand, within CCNA_00439 at 447.147 kb on + strand, within CCNA_00439 at 447.183 kb on - strand, within CCNA_00439 at 447.185 kb on + strand, within CCNA_00439 at 447.192 kb on + strand, within CCNA_00439 at 447.192 kb on + strand, within CCNA_00439 at 447.200 kb on - strand, within CCNA_00439 at 447.206 kb on + strand, within CCNA_00439 at 447.231 kb on - strand, within CCNA_00439 at 447.274 kb on - strand, within CCNA_00439 at 447.274 kb on - strand, within CCNA_00439 at 447.301 kb on - strand, within CCNA_00439 at 447.309 kb on - strand, within CCNA_00439 at 447.328 kb on + strand at 447.328 kb on + strand at 447.340 kb on + strand at 447.353 kb on + strand at 447.362 kb on - strand at 447.373 kb on + strand at 447.384 kb on + strand at 447.389 kb on + strand at 447.420 kb on + strand at 447.453 kb on + strand at 447.456 kb on - strand at 447.485 kb on + strand at 447.615 kb on - strand, within CCNA_00440 at 447.621 kb on - strand, within CCNA_00440 at 447.623 kb on + strand, within CCNA_00440 at 447.659 kb on + strand, within CCNA_00440 at 447.667 kb on - strand, within CCNA_00440 at 447.680 kb on + strand, within CCNA_00440 at 447.695 kb on + strand, within CCNA_00440 at 447.722 kb on + strand, within CCNA_00440 at 447.729 kb on + strand, within CCNA_00440 at 447.767 kb on - strand, within CCNA_00440 at 447.849 kb on - strand, within CCNA_00441 at 447.878 kb on + strand, within CCNA_00441 at 447.884 kb on + strand, within CCNA_00441 at 447.896 kb on - strand, within CCNA_00441 at 447.903 kb on - strand, within CCNA_00441 at 447.904 kb on + strand, within CCNA_00441 at 447.922 kb on + strand, within CCNA_00441 at 447.922 kb on - strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.938 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.983 kb on + strand, within CCNA_00441 at 447.993 kb on + strand, within CCNA_00441 at 448.017 kb on + strand, within CCNA_00441 at 448.037 kb on + strand, within CCNA_00441 at 448.097 kb on + strand, within CCNA_00441 at 448.142 kb on + strand at 448.162 kb on + strand at 448.162 kb on + strand at 448.162 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.181 kb on + strand at 448.183 kb on + strand at 448.189 kb on - strand at 448.189 kb on - strand at 448.212 kb on - strand at 448.220 kb on + strand at 448.228 kb on - strand at 448.244 kb on + strand at 448.244 kb on + strand at 448.253 kb on + strand at 448.254 kb on + strand at 448.254 kb on + strand at 448.260 kb on + strand at 448.299 kb on + strand at 448.307 kb on - strand at 448.312 kb on + strand at 448.320 kb on - strand at 448.340 kb on + strand at 448.362 kb on + strand at 448.365 kb on - strand at 448.365 kb on - strand at 448.370 kb on - strand at 448.414 kb on - strand at 448.455 kb on - strand at 448.457 kb on + strand at 448.482 kb on - strand, within CCNA_00442
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days remove 444,503 + CCNA_00437 0.89 -1.8 444,511 - CCNA_00437 0.90 -2.1 444,513 + CCNA_00437 0.90 +1.4 444,520 + -0.8 444,530 - -1.7 444,541 - -1.0 444,686 + -0.8 444,694 - -1.6 444,708 - +1.3 444,708 - +0.2 444,710 - -3.1 444,715 + +1.2 444,723 - +1.9 444,723 - +1.5 444,738 + +0.7 444,758 + -1.4 444,758 + -1.7 444,758 + -0.2 444,766 + +0.8 444,766 - -2.2 444,827 - +1.6 444,827 - -1.1 444,832 - -0.6 444,848 - -1.6 444,857 - -0.4 444,858 - +2.8 444,985 + CCNA_00438 0.31 +2.6 445,006 + CCNA_00438 0.38 -0.4 445,006 + CCNA_00438 0.38 -0.2 445,013 + CCNA_00438 0.40 +2.6 445,014 - CCNA_00438 0.40 +1.3 445,021 - CCNA_00438 0.42 +0.4 445,051 - CCNA_00438 0.52 +1.1 445,055 + CCNA_00438 0.53 +2.6 445,055 + CCNA_00438 0.53 -1.6 445,063 - CCNA_00438 0.56 +1.3 445,063 - CCNA_00438 0.56 -1.8 445,083 - CCNA_00438 0.62 +2.5 445,092 + CCNA_00438 0.65 -0.8 445,108 - CCNA_00438 0.70 +0.1 445,116 - CCNA_00438 0.73 +1.1 445,141 + CCNA_00438 0.81 -1.5 445,202 - -0.8 445,202 - -0.9 445,359 - -0.2 445,376 - -1.2 445,378 + -0.1 445,491 + +1.0 445,499 - -0.6 445,499 - -1.1 445,519 + +1.9 445,526 + +1.5 445,526 + +1.2 445,526 + +1.0 445,526 + +2.5 445,526 + +0.6 445,534 - -1.2 445,534 - -0.6 445,534 - -1.0 445,534 - +1.6 445,534 - +1.6 445,567 + +1.5 445,575 - +1.6 445,599 - -1.0 445,611 + +0.4 445,650 + +1.2 445,684 - +2.6 445,691 - +2.6 445,774 + CCNA_00439 0.14 +3.1 445,782 - CCNA_00439 0.14 -0.8 445,782 - CCNA_00439 0.14 +0.3 445,790 + CCNA_00439 0.14 +0.9 445,832 + CCNA_00439 0.17 +2.0 445,840 - CCNA_00439 0.17 +0.6 445,883 + CCNA_00439 0.19 +0.7 445,906 + CCNA_00439 0.20 +1.6 445,906 + CCNA_00439 0.20 +1.8 445,932 - CCNA_00439 0.22 -2.3 445,952 - CCNA_00439 0.23 +0.6 445,955 + CCNA_00439 0.23 +0.6 445,962 + CCNA_00439 0.23 +1.4 445,975 - CCNA_00439 0.24 -0.6 445,999 + CCNA_00439 0.25 +1.1 445,999 + CCNA_00439 0.25 +1.9 446,024 - CCNA_00439 0.26 +1.1 446,045 + CCNA_00439 0.27 +0.7 446,051 + CCNA_00439 0.27 +0.9 446,070 - CCNA_00439 0.28 +0.6 446,070 - CCNA_00439 0.28 -3.5 446,090 + CCNA_00439 0.29 +3.8 446,096 + CCNA_00439 0.30 +2.1 446,103 + CCNA_00439 0.30 -0.3 446,108 + CCNA_00439 0.30 +1.0 446,108 + CCNA_00439 0.30 +1.8 446,121 - CCNA_00439 0.31 -2.7 446,147 + CCNA_00439 0.32 +1.4 446,162 + CCNA_00439 0.33 +2.5 446,169 + CCNA_00439 0.33 +1.7 446,240 + CCNA_00439 0.37 +1.8 446,247 + CCNA_00439 0.37 +0.2 446,248 - CCNA_00439 0.37 -1.9 446,252 + CCNA_00439 0.37 +2.4 446,255 - CCNA_00439 0.37 -2.3 446,284 + CCNA_00439 0.39 +2.0 446,310 + CCNA_00439 0.40 +0.3 446,312 + CCNA_00439 0.40 +0.5 446,312 + CCNA_00439 0.40 +0.3 446,344 - CCNA_00439 0.42 +1.4 446,349 - CCNA_00439 0.42 -1.6 446,349 - CCNA_00439 0.42 +1.0 446,349 - CCNA_00439 0.42 +1.0 446,349 - CCNA_00439 0.42 -0.1 446,381 + CCNA_00439 0.44 +1.5 446,389 - CCNA_00439 0.44 -2.8 446,402 + CCNA_00439 0.45 +2.1 446,410 - CCNA_00439 0.45 +1.0 446,451 + CCNA_00439 0.47 -0.7 446,473 + CCNA_00439 0.48 +1.3 446,483 + CCNA_00439 0.49 +0.7 446,483 + CCNA_00439 0.49 +1.8 446,493 + CCNA_00439 0.49 +1.3 446,550 + CCNA_00439 0.52 +1.2 446,552 + CCNA_00439 0.52 +1.2 446,569 - CCNA_00439 0.53 -0.8 446,570 - CCNA_00439 0.53 -1.5 446,668 + CCNA_00439 0.58 +2.0 446,668 + CCNA_00439 0.58 +1.3 446,673 + CCNA_00439 0.58 +1.8 446,718 - CCNA_00439 0.60 +0.3 446,746 - CCNA_00439 0.62 +0.2 446,765 - CCNA_00439 0.63 -1.6 446,822 - CCNA_00439 0.66 -1.8 446,824 + CCNA_00439 0.66 +1.0 446,829 + CCNA_00439 0.66 +1.1 446,837 - CCNA_00439 0.66 -0.9 446,847 + CCNA_00439 0.67 +1.6 446,862 + CCNA_00439 0.68 +1.3 446,865 - CCNA_00439 0.68 -3.4 446,865 - CCNA_00439 0.68 -2.1 446,887 - CCNA_00439 0.69 +1.6 446,944 - CCNA_00439 0.72 +0.4 446,951 + CCNA_00439 0.72 +1.1 446,968 - CCNA_00439 0.73 +1.0 446,994 + CCNA_00439 0.74 +2.5 446,994 + CCNA_00439 0.74 +0.9 446,994 + CCNA_00439 0.74 +2.0 447,002 - CCNA_00439 0.74 +0.5 447,006 + CCNA_00439 0.75 +0.1 447,033 - CCNA_00439 0.76 +2.1 447,035 + CCNA_00439 0.76 +0.9 447,035 + CCNA_00439 0.76 +2.2 447,035 + CCNA_00439 0.76 +2.2 447,035 + CCNA_00439 0.76 +2.2 447,042 + CCNA_00439 0.76 -0.9 447,043 - CCNA_00439 0.76 +0.6 447,043 - CCNA_00439 0.76 -1.4 447,050 + CCNA_00439 0.77 +1.6 447,147 + CCNA_00439 0.82 +0.3 447,183 - CCNA_00439 0.83 -1.6 447,185 + CCNA_00439 0.83 -1.2 447,192 + CCNA_00439 0.84 +1.5 447,192 + CCNA_00439 0.84 +1.9 447,200 - CCNA_00439 0.84 -1.0 447,206 + CCNA_00439 0.85 +1.4 447,231 - CCNA_00439 0.86 +0.1 447,274 - CCNA_00439 0.88 +1.0 447,274 - CCNA_00439 0.88 -1.6 447,301 - CCNA_00439 0.89 -3.2 447,309 - CCNA_00439 0.90 +2.4 447,328 + +1.5 447,328 + +2.1 447,340 + -1.7 447,353 + +1.5 447,362 - -3.0 447,373 + +1.0 447,384 + +3.6 447,389 + -2.3 447,420 + +1.3 447,453 + +0.8 447,456 - -1.2 447,485 + +2.4 447,615 - CCNA_00440 0.34 +1.6 447,621 - CCNA_00440 0.36 +0.2 447,623 + CCNA_00440 0.36 +1.6 447,659 + CCNA_00440 0.49 +1.1 447,667 - CCNA_00440 0.52 -3.1 447,680 + CCNA_00440 0.56 +0.8 447,695 + CCNA_00440 0.61 +2.2 447,722 + CCNA_00440 0.71 +1.4 447,729 + CCNA_00440 0.73 +1.1 447,767 - CCNA_00440 0.86 -1.3 447,849 - CCNA_00441 0.13 +0.6 447,878 + CCNA_00441 0.21 +1.1 447,884 + CCNA_00441 0.22 +0.9 447,896 - CCNA_00441 0.26 -3.6 447,903 - CCNA_00441 0.28 -1.2 447,904 + CCNA_00441 0.28 -0.2 447,922 + CCNA_00441 0.33 +0.7 447,922 - CCNA_00441 0.33 -1.3 447,938 + CCNA_00441 0.37 -1.1 447,938 + CCNA_00441 0.37 +1.4 447,938 + CCNA_00441 0.37 +1.8 447,983 + CCNA_00441 0.49 +1.4 447,983 + CCNA_00441 0.49 +2.2 447,983 + CCNA_00441 0.49 +1.5 447,983 + CCNA_00441 0.49 -0.1 447,993 + CCNA_00441 0.52 +1.5 448,017 + CCNA_00441 0.59 +1.6 448,037 + CCNA_00441 0.64 +1.4 448,097 + CCNA_00441 0.81 +0.2 448,142 + +1.1 448,162 + +1.7 448,162 + +1.2 448,162 + +0.6 448,181 + +1.4 448,181 + +2.0 448,181 + +1.3 448,181 + +1.5 448,183 + +1.2 448,189 - -0.6 448,189 - +1.6 448,212 - -1.0 448,220 + +1.8 448,228 - +2.6 448,244 + +1.9 448,244 + +0.1 448,253 + +1.1 448,254 + +1.3 448,254 + +1.1 448,260 + +1.7 448,299 + +1.3 448,307 - +2.6 448,312 + +1.3 448,320 - -1.0 448,340 + -0.6 448,362 + +0.3 448,365 - -1.4 448,365 - -0.8 448,370 - +0.5 448,414 - +1.6 448,455 - -2.3 448,457 + +0.9 448,482 - CCNA_00442 0.11 +1.6
Or see this region's nucleotide sequence