Experiment: PYE_noCalcium 30C survival rep2 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00245 and CCNA_00246 are separated by 44 nucleotides CCNA_00246 and CCNA_00247 are separated by 141 nucleotides CCNA_00247 and CCNA_00248 are separated by 77 nucleotides
CCNA_00245: CCNA_00245 - pterin-4-alpha-carbinolamine dehydratase, at 257,623 to 257,907
_00245
CCNA_00246: CCNA_00246 - cyclohexanol dehydrogenase, at 257,952 to 258,737
_00246
CCNA_00247: CCNA_00247 - two-component receiver protein SpdR, at 258,879 to 259,436
_00247
CCNA_00248: CCNA_00248 - sensor histidine protein kinase, at 259,514 to 260,914
_00248
Position (kb) 258
259
260 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 257.886 kb on + strand at 257.895 kb on - strand at 257.953 kb on - strand at 257.960 kb on + strand at 257.960 kb on + strand at 257.962 kb on + strand at 258.014 kb on - strand at 258.038 kb on - strand, within CCNA_00246 at 258.049 kb on - strand, within CCNA_00246 at 258.073 kb on + strand, within CCNA_00246 at 258.073 kb on + strand, within CCNA_00246 at 258.103 kb on - strand, within CCNA_00246 at 258.110 kb on + strand, within CCNA_00246 at 258.138 kb on + strand, within CCNA_00246 at 258.146 kb on - strand, within CCNA_00246 at 258.146 kb on - strand, within CCNA_00246 at 258.151 kb on + strand, within CCNA_00246 at 258.153 kb on - strand, within CCNA_00246 at 258.228 kb on - strand, within CCNA_00246 at 258.277 kb on + strand, within CCNA_00246 at 258.296 kb on + strand, within CCNA_00246 at 258.305 kb on + strand, within CCNA_00246 at 258.341 kb on + strand, within CCNA_00246 at 258.343 kb on + strand, within CCNA_00246 at 258.348 kb on + strand, within CCNA_00246 at 258.430 kb on + strand, within CCNA_00246 at 258.477 kb on + strand, within CCNA_00246 at 258.477 kb on + strand, within CCNA_00246 at 258.477 kb on + strand, within CCNA_00246 at 258.477 kb on + strand, within CCNA_00246 at 258.477 kb on + strand, within CCNA_00246 at 258.482 kb on + strand, within CCNA_00246 at 258.485 kb on - strand, within CCNA_00246 at 258.490 kb on - strand, within CCNA_00246 at 258.490 kb on - strand, within CCNA_00246 at 258.494 kb on + strand, within CCNA_00246 at 258.520 kb on + strand, within CCNA_00246 at 258.544 kb on + strand, within CCNA_00246 at 258.552 kb on - strand, within CCNA_00246 at 258.557 kb on - strand, within CCNA_00246 at 258.581 kb on + strand, within CCNA_00246 at 258.585 kb on - strand, within CCNA_00246 at 258.590 kb on - strand, within CCNA_00246 at 258.590 kb on - strand, within CCNA_00246 at 258.592 kb on + strand, within CCNA_00246 at 258.686 kb on + strand at 258.694 kb on - strand at 258.704 kb on + strand at 258.705 kb on - strand at 258.711 kb on + strand at 258.741 kb on + strand at 258.741 kb on + strand at 258.741 kb on + strand at 258.785 kb on - strand at 258.786 kb on + strand at 258.786 kb on + strand at 258.833 kb on + strand at 258.833 kb on + strand at 258.841 kb on - strand at 258.841 kb on - strand at 258.841 kb on - strand at 258.882 kb on - strand at 258.932 kb on - strand at 258.965 kb on - strand, within CCNA_00247 at 259.082 kb on - strand, within CCNA_00247 at 259.088 kb on + strand, within CCNA_00247 at 259.093 kb on + strand, within CCNA_00247 at 259.093 kb on + strand, within CCNA_00247 at 259.093 kb on + strand, within CCNA_00247 at 259.101 kb on - strand, within CCNA_00247 at 259.101 kb on - strand, within CCNA_00247 at 259.101 kb on - strand, within CCNA_00247 at 259.114 kb on + strand, within CCNA_00247 at 259.128 kb on - strand, within CCNA_00247 at 259.152 kb on + strand, within CCNA_00247 at 259.168 kb on + strand, within CCNA_00247 at 259.204 kb on + strand, within CCNA_00247 at 259.215 kb on + strand, within CCNA_00247 at 259.215 kb on + strand, within CCNA_00247 at 259.215 kb on + strand, within CCNA_00247 at 259.215 kb on + strand, within CCNA_00247 at 259.223 kb on - strand, within CCNA_00247 at 259.223 kb on - strand, within CCNA_00247 at 259.223 kb on - strand, within CCNA_00247 at 259.245 kb on + strand, within CCNA_00247 at 259.245 kb on + strand, within CCNA_00247 at 259.245 kb on + strand, within CCNA_00247 at 259.253 kb on - strand, within CCNA_00247 at 259.253 kb on - strand, within CCNA_00247 at 259.253 kb on - strand, within CCNA_00247 at 259.258 kb on - strand, within CCNA_00247 at 259.261 kb on + strand, within CCNA_00247 at 259.275 kb on - strand, within CCNA_00247 at 259.284 kb on + strand at 259.289 kb on + strand, within CCNA_00247 at 259.292 kb on - strand, within CCNA_00247 at 259.292 kb on - strand, within CCNA_00247 at 259.297 kb on - strand, within CCNA_00247 at 259.297 kb on - strand, within CCNA_00247 at 259.321 kb on - strand, within CCNA_00247 at 259.327 kb on - strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.334 kb on + strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.342 kb on - strand, within CCNA_00247 at 259.343 kb on - strand, within CCNA_00247 at 259.349 kb on + strand, within CCNA_00247 at 259.350 kb on - strand, within CCNA_00247 at 259.353 kb on - strand, within CCNA_00247 at 259.355 kb on - strand at 259.356 kb on + strand, within CCNA_00247 at 259.356 kb on + strand, within CCNA_00247 at 259.360 kb on - strand, within CCNA_00247 at 259.360 kb on - strand, within CCNA_00247 at 259.512 kb on + strand at 259.512 kb on + strand at 259.522 kb on + strand at 259.522 kb on + strand at 259.548 kb on + strand at 259.548 kb on + strand at 259.548 kb on + strand at 259.549 kb on + strand at 259.549 kb on + strand at 259.549 kb on + strand at 259.549 kb on + strand at 259.556 kb on - strand at 259.562 kb on - strand at 259.570 kb on + strand at 259.570 kb on - strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.578 kb on - strand at 259.591 kb on - strand at 259.601 kb on + strand at 259.601 kb on - strand at 259.626 kb on + strand at 259.631 kb on + strand at 259.634 kb on - strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.649 kb on + strand at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand, within CCNA_00248 at 259.657 kb on - strand at 259.662 kb on - strand, within CCNA_00248 at 259.696 kb on + strand, within CCNA_00248 at 259.700 kb on + strand, within CCNA_00248 at 259.707 kb on + strand, within CCNA_00248 at 259.707 kb on + strand, within CCNA_00248 at 259.803 kb on + strand, within CCNA_00248 at 259.804 kb on - strand, within CCNA_00248 at 259.837 kb on - strand, within CCNA_00248 at 259.862 kb on - strand, within CCNA_00248 at 259.868 kb on + strand, within CCNA_00248 at 259.870 kb on + strand, within CCNA_00248 at 259.878 kb on - strand, within CCNA_00248 at 259.878 kb on - strand, within CCNA_00248 at 259.880 kb on + strand, within CCNA_00248 at 259.888 kb on - strand, within CCNA_00248 at 259.975 kb on - strand, within CCNA_00248 at 259.975 kb on - strand, within CCNA_00248 at 259.978 kb on + strand, within CCNA_00248 at 259.980 kb on - strand, within CCNA_00248 at 259.985 kb on - strand, within CCNA_00248 at 259.989 kb on - strand, within CCNA_00248 at 259.997 kb on + strand, within CCNA_00248 at 260.014 kb on - strand, within CCNA_00248 at 260.044 kb on - strand, within CCNA_00248 at 260.123 kb on - strand, within CCNA_00248 at 260.123 kb on - strand, within CCNA_00248 at 260.123 kb on - strand, within CCNA_00248 at 260.193 kb on + strand, within CCNA_00248 at 260.223 kb on - strand, within CCNA_00248 at 260.249 kb on + strand, within CCNA_00248 at 260.279 kb on + strand, within CCNA_00248 at 260.299 kb on - strand, within CCNA_00248 at 260.352 kb on + strand, within CCNA_00248 at 260.360 kb on - strand, within CCNA_00248 at 260.365 kb on - strand, within CCNA_00248 at 260.400 kb on + strand, within CCNA_00248 at 260.408 kb on - strand, within CCNA_00248
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days remove 257,886 + +0.9 257,895 - +0.1 257,953 - +0.5 257,960 + +1.5 257,960 + +0.4 257,962 + -0.1 258,014 - -2.3 258,038 - CCNA_00246 0.11 +1.0 258,049 - CCNA_00246 0.12 -2.2 258,073 + CCNA_00246 0.15 +0.8 258,073 + CCNA_00246 0.15 -3.3 258,103 - CCNA_00246 0.19 +0.3 258,110 + CCNA_00246 0.20 -0.0 258,138 + CCNA_00246 0.24 +1.0 258,146 - CCNA_00246 0.25 -1.4 258,146 - CCNA_00246 0.25 -1.3 258,151 + CCNA_00246 0.25 -2.3 258,153 - CCNA_00246 0.26 -2.3 258,228 - CCNA_00246 0.35 +0.9 258,277 + CCNA_00246 0.41 -1.8 258,296 + CCNA_00246 0.44 -2.3 258,305 + CCNA_00246 0.45 -1.0 258,341 + CCNA_00246 0.49 -1.0 258,343 + CCNA_00246 0.50 -1.3 258,348 + CCNA_00246 0.50 -1.4 258,430 + CCNA_00246 0.61 +0.3 258,477 + CCNA_00246 0.67 +1.0 258,477 + CCNA_00246 0.67 +0.5 258,477 + CCNA_00246 0.67 -1.8 258,477 + CCNA_00246 0.67 -1.2 258,477 + CCNA_00246 0.67 -1.0 258,482 + CCNA_00246 0.67 +0.2 258,485 - CCNA_00246 0.68 -1.4 258,490 - CCNA_00246 0.68 -3.0 258,490 - CCNA_00246 0.68 +0.6 258,494 + CCNA_00246 0.69 +2.5 258,520 + CCNA_00246 0.72 -1.1 258,544 + CCNA_00246 0.75 +1.1 258,552 - CCNA_00246 0.76 +0.4 258,557 - CCNA_00246 0.77 +1.5 258,581 + CCNA_00246 0.80 +3.4 258,585 - CCNA_00246 0.81 +4.8 258,590 - CCNA_00246 0.81 +0.8 258,590 - CCNA_00246 0.81 -2.4 258,592 + CCNA_00246 0.81 -0.2 258,686 + +0.5 258,694 - +2.0 258,704 + -0.8 258,705 - -1.1 258,711 + +0.2 258,741 + +0.3 258,741 + +1.7 258,741 + +1.4 258,785 - +1.0 258,786 + -1.9 258,786 + +1.4 258,833 + -2.4 258,833 + +1.8 258,841 - -0.6 258,841 - +0.4 258,841 - +1.5 258,882 - +0.3 258,932 - -2.3 258,965 - CCNA_00247 0.15 -0.2 259,082 - CCNA_00247 0.36 -2.5 259,088 + CCNA_00247 0.37 -2.2 259,093 + CCNA_00247 0.38 -2.4 259,093 + CCNA_00247 0.38 -1.9 259,093 + CCNA_00247 0.38 +1.7 259,101 - CCNA_00247 0.40 -2.0 259,101 - CCNA_00247 0.40 -4.0 259,101 - CCNA_00247 0.40 -3.5 259,114 + CCNA_00247 0.42 -2.0 259,128 - CCNA_00247 0.45 -2.2 259,152 + CCNA_00247 0.49 -1.0 259,168 + CCNA_00247 0.52 +1.0 259,204 + CCNA_00247 0.58 -1.9 259,215 + CCNA_00247 0.60 -1.2 259,215 + CCNA_00247 0.60 -0.9 259,215 + CCNA_00247 0.60 -1.9 259,215 + CCNA_00247 0.60 -0.4 259,223 - CCNA_00247 0.62 -1.2 259,223 - CCNA_00247 0.62 -2.5 259,223 - CCNA_00247 0.62 -1.5 259,245 + CCNA_00247 0.66 -2.2 259,245 + CCNA_00247 0.66 -1.9 259,245 + CCNA_00247 0.66 -2.1 259,253 - CCNA_00247 0.67 -2.3 259,253 - CCNA_00247 0.67 +0.2 259,253 - CCNA_00247 0.67 -1.2 259,258 - CCNA_00247 0.68 -2.6 259,261 + CCNA_00247 0.68 -1.3 259,275 - CCNA_00247 0.71 -0.1 259,284 + -1.5 259,289 + CCNA_00247 0.73 -1.5 259,292 - CCNA_00247 0.74 -0.1 259,292 - CCNA_00247 0.74 -1.5 259,297 - CCNA_00247 0.75 +0.8 259,297 - CCNA_00247 0.75 -3.8 259,321 - CCNA_00247 0.79 -3.6 259,327 - CCNA_00247 0.80 -2.2 259,334 + CCNA_00247 0.82 -2.5 259,334 + CCNA_00247 0.82 -1.5 259,334 + CCNA_00247 0.82 -1.4 259,334 + CCNA_00247 0.82 +2.5 259,334 + CCNA_00247 0.82 -1.7 259,334 + CCNA_00247 0.82 -1.6 259,334 + CCNA_00247 0.82 -2.9 259,334 + CCNA_00247 0.82 -1.6 259,334 + CCNA_00247 0.82 -1.2 259,334 + CCNA_00247 0.82 +0.2 259,334 + CCNA_00247 0.82 -1.9 259,334 + CCNA_00247 0.82 +2.5 259,334 + CCNA_00247 0.82 -3.6 259,334 + CCNA_00247 0.82 -1.6 259,334 + CCNA_00247 0.82 -0.6 259,334 + CCNA_00247 0.82 -0.3 259,342 - CCNA_00247 0.83 -2.0 259,342 - CCNA_00247 0.83 +0.0 259,342 - CCNA_00247 0.83 -3.2 259,342 - CCNA_00247 0.83 -1.0 259,342 - CCNA_00247 0.83 -1.6 259,342 - CCNA_00247 0.83 -1.2 259,342 - CCNA_00247 0.83 -0.7 259,342 - CCNA_00247 0.83 -2.3 259,342 - CCNA_00247 0.83 -1.6 259,342 - CCNA_00247 0.83 -0.7 259,342 - CCNA_00247 0.83 -2.7 259,342 - CCNA_00247 0.83 -0.9 259,342 - CCNA_00247 0.83 -2.5 259,342 - CCNA_00247 0.83 -2.7 259,342 - CCNA_00247 0.83 -0.6 259,342 - CCNA_00247 0.83 -0.9 259,343 - CCNA_00247 0.83 +0.7 259,349 + CCNA_00247 0.84 -1.6 259,350 - CCNA_00247 0.84 -0.3 259,353 - CCNA_00247 0.85 -1.9 259,355 - -0.0 259,356 + CCNA_00247 0.85 -0.5 259,356 + CCNA_00247 0.85 -2.0 259,360 - CCNA_00247 0.86 -2.7 259,360 - CCNA_00247 0.86 -1.2 259,512 + -2.0 259,512 + -2.5 259,522 + -3.6 259,522 + -2.5 259,548 + -1.2 259,548 + -3.1 259,548 + -0.5 259,549 + +1.5 259,549 + -3.7 259,549 + -1.9 259,549 + +2.5 259,556 - -0.2 259,562 - -0.3 259,570 + -0.9 259,570 - -0.4 259,576 - +0.2 259,576 - -1.2 259,578 - -1.9 259,591 - -1.5 259,601 + -2.4 259,601 - +0.5 259,626 + -2.1 259,631 + +2.5 259,634 - -2.4 259,649 + +0.5 259,649 + +2.5 259,649 + +0.2 259,649 + -1.9 259,649 + -1.5 259,649 + -1.2 259,649 + -0.4 259,657 - CCNA_00248 0.10 -0.4 259,657 - CCNA_00248 0.10 -2.6 259,657 - CCNA_00248 0.10 +1.4 259,657 - CCNA_00248 0.10 -0.3 259,657 - CCNA_00248 0.10 -0.1 259,657 - CCNA_00248 0.10 -0.7 259,657 - +1.5 259,662 - CCNA_00248 0.11 -2.0 259,696 + CCNA_00248 0.13 -0.0 259,700 + CCNA_00248 0.13 +2.5 259,707 + CCNA_00248 0.14 -1.7 259,707 + CCNA_00248 0.14 -0.9 259,803 + CCNA_00248 0.21 -2.3 259,804 - CCNA_00248 0.21 +1.3 259,837 - CCNA_00248 0.23 -1.4 259,862 - CCNA_00248 0.25 -1.0 259,868 + CCNA_00248 0.25 -1.0 259,870 + CCNA_00248 0.25 -0.8 259,878 - CCNA_00248 0.26 +1.8 259,878 - CCNA_00248 0.26 -0.3 259,880 + CCNA_00248 0.26 +1.5 259,888 - CCNA_00248 0.27 -2.5 259,975 - CCNA_00248 0.33 -2.4 259,975 - CCNA_00248 0.33 +0.6 259,978 + CCNA_00248 0.33 -0.2 259,980 - CCNA_00248 0.33 -1.6 259,985 - CCNA_00248 0.34 +0.4 259,989 - CCNA_00248 0.34 -2.5 259,997 + CCNA_00248 0.34 -1.1 260,014 - CCNA_00248 0.36 +0.1 260,044 - CCNA_00248 0.38 -1.7 260,123 - CCNA_00248 0.43 -1.2 260,123 - CCNA_00248 0.43 +1.3 260,123 - CCNA_00248 0.43 -0.6 260,193 + CCNA_00248 0.48 +0.5 260,223 - CCNA_00248 0.51 -3.0 260,249 + CCNA_00248 0.52 +1.0 260,279 + CCNA_00248 0.55 -0.7 260,299 - CCNA_00248 0.56 -0.6 260,352 + CCNA_00248 0.60 +1.0 260,360 - CCNA_00248 0.60 +0.5 260,365 - CCNA_00248 0.61 +0.5 260,400 + CCNA_00248 0.63 -1.2 260,408 - CCNA_00248 0.64 +1.0
Or see this region's nucleotide sequence