Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00125

Experiment: PYE_noCalcium 30C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00123 and CCNA_00124 are separated by 143 nucleotidesCCNA_00124 and CCNA_00125 are separated by 95 nucleotidesCCNA_00125 and CCNA_00126 are separated by 6 nucleotidesCCNA_00126 and CCNA_00127 are separated by 219 nucleotides CCNA_00123: CCNA_00123 - 3-hydroxyacyl CoA dehydrogenase, at 133,900 to 134,682 _00123 CCNA_00124: CCNA_00124 - hypothetical protein, at 134,826 to 135,413 _00124 CCNA_00125: CCNA_00125 - amino acid efflux permease, at 135,509 to 136,177 _00125 CCNA_00126: CCNA_00126 - glutathione S-transferase, at 136,184 to 136,591 _00126 CCNA_00127: CCNA_00127 - KTSC domain protein, at 136,811 to 137,011 _00127 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.529 kb on + strand, within CCNA_00123at 134.576 kb on - strand, within CCNA_00123at 134.588 kb on - strand, within CCNA_00123at 134.607 kb on + strandat 134.644 kb on - strandat 134.676 kb on + strandat 134.676 kb on + strandat 134.681 kb on + strandat 134.802 kb on + strandat 134.809 kb on + strandat 134.810 kb on - strandat 134.882 kb on + strandat 134.890 kb on - strand, within CCNA_00124at 134.890 kb on - strand, within CCNA_00124at 134.944 kb on + strand, within CCNA_00124at 134.952 kb on + strand, within CCNA_00124at 134.960 kb on - strand, within CCNA_00124at 134.962 kb on + strand, within CCNA_00124at 134.970 kb on - strand, within CCNA_00124at 134.991 kb on - strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 134.998 kb on + strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.006 kb on - strand, within CCNA_00124at 135.007 kb on - strand, within CCNA_00124at 135.008 kb on + strand, within CCNA_00124at 135.016 kb on - strand, within CCNA_00124at 135.024 kb on + strand, within CCNA_00124at 135.033 kb on - strand, within CCNA_00124at 135.035 kb on + strand, within CCNA_00124at 135.038 kb on - strand, within CCNA_00124at 135.043 kb on - strand, within CCNA_00124at 135.066 kb on + strand, within CCNA_00124at 135.081 kb on + strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.121 kb on - strand, within CCNA_00124at 135.162 kb on - strand, within CCNA_00124at 135.165 kb on + strand, within CCNA_00124at 135.165 kb on + strand, within CCNA_00124at 135.173 kb on - strand, within CCNA_00124at 135.201 kb on + strand, within CCNA_00124at 135.233 kb on + strand, within CCNA_00124at 135.242 kb on - strand, within CCNA_00124at 135.243 kb on + strand, within CCNA_00124at 135.257 kb on - strand, within CCNA_00124at 135.319 kb on - strand, within CCNA_00124at 135.370 kb on + strandat 135.374 kb on + strandat 135.378 kb on - strandat 135.382 kb on - strandat 135.443 kb on + strandat 135.456 kb on - strandat 135.610 kb on + strand, within CCNA_00125at 135.613 kb on - strand, within CCNA_00125at 135.618 kb on - strand, within CCNA_00125at 135.632 kb on + strand, within CCNA_00125at 135.647 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.652 kb on - strand, within CCNA_00125at 135.657 kb on - strand, within CCNA_00125at 135.683 kb on - strand, within CCNA_00125at 135.695 kb on - strand, within CCNA_00125at 135.743 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.750 kb on + strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.758 kb on - strand, within CCNA_00125at 135.787 kb on - strand, within CCNA_00125at 135.868 kb on - strand, within CCNA_00125at 135.868 kb on - strand, within CCNA_00125at 135.870 kb on + strand, within CCNA_00125at 135.878 kb on - strand, within CCNA_00125at 135.950 kb on - strand, within CCNA_00125at 135.955 kb on - strand, within CCNA_00125at 135.966 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.971 kb on + strand, within CCNA_00125at 135.974 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.979 kb on - strand, within CCNA_00125at 135.986 kb on + strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 135.994 kb on - strand, within CCNA_00125at 136.017 kb on + strand, within CCNA_00125at 136.102 kb on - strand, within CCNA_00125at 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.148 kb on + strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.156 kb on - strandat 136.189 kb on - strandat 136.196 kb on - strandat 136.196 kb on - strandat 136.196 kb on - strandat 136.213 kb on - strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.215 kb on + strandat 136.220 kb on + strandat 136.223 kb on - strandat 136.266 kb on + strand, within CCNA_00126at 136.310 kb on + strand, within CCNA_00126at 136.318 kb on - strand, within CCNA_00126at 136.326 kb on - strand, within CCNA_00126at 136.336 kb on + strand, within CCNA_00126at 136.341 kb on + strand, within CCNA_00126at 136.341 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.368 kb on + strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.376 kb on - strand, within CCNA_00126at 136.387 kb on + strand, within CCNA_00126at 136.414 kb on - strand, within CCNA_00126at 136.425 kb on + strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.433 kb on - strand, within CCNA_00126at 136.474 kb on + strand, within CCNA_00126at 136.533 kb on + strand, within CCNA_00126at 136.547 kb on + strand, within CCNA_00126at 136.580 kb on + strandat 136.612 kb on + strandat 136.649 kb on - strandat 136.649 kb on - strandat 136.654 kb on - strandat 136.679 kb on + strandat 136.679 kb on + strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.687 kb on - strandat 136.742 kb on + strandat 136.749 kb on - strandat 136.794 kb on + strandat 136.800 kb on + strandat 136.801 kb on + strandat 136.801 kb on + strandat 136.842 kb on - strand, within CCNA_00127at 136.852 kb on - strand, within CCNA_00127at 136.852 kb on - strand, within CCNA_00127at 136.859 kb on - strand, within CCNA_00127at 136.868 kb on - strand, within CCNA_00127at 136.870 kb on + strand, within CCNA_00127at 136.875 kb on - strand, within CCNA_00127at 136.913 kb on - strand, within CCNA_00127at 136.924 kb on - strand, within CCNA_00127at 136.932 kb on - strand, within CCNA_00127at 136.934 kb on + strand, within CCNA_00127at 136.942 kb on - strand, within CCNA_00127at 136.944 kb on - strand, within CCNA_00127at 136.992 kb on - strandat 137.014 kb on - strandat 137.075 kb on - strandat 137.083 kb on - strandat 137.086 kb on + strandat 137.091 kb on + strandat 137.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 30C survival rep2 28 days
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134,529 + CCNA_00123 0.80 -1.4
134,576 - CCNA_00123 0.86 -2.8
134,588 - CCNA_00123 0.88 +0.3
134,607 + -0.3
134,644 - +0.1
134,676 + +1.2
134,676 + +1.7
134,681 + -0.1
134,802 + -1.1
134,809 + -1.4
134,810 - +0.5
134,882 + +0.3
134,890 - CCNA_00124 0.11 -1.4
134,890 - CCNA_00124 0.11 +2.0
134,944 + CCNA_00124 0.20 -0.4
134,952 + CCNA_00124 0.21 +2.6
134,960 - CCNA_00124 0.23 +0.3
134,962 + CCNA_00124 0.23 -1.7
134,970 - CCNA_00124 0.24 -0.2
134,991 - CCNA_00124 0.28 +0.1
134,998 + CCNA_00124 0.29 -1.9
134,998 + CCNA_00124 0.29 -2.0
134,998 + CCNA_00124 0.29 -3.2
134,998 + CCNA_00124 0.29 +0.4
135,006 - CCNA_00124 0.31 -0.6
135,006 - CCNA_00124 0.31 -1.1
135,006 - CCNA_00124 0.31 -0.9
135,006 - CCNA_00124 0.31 +0.4
135,006 - CCNA_00124 0.31 +0.8
135,007 - CCNA_00124 0.31 -0.0
135,008 + CCNA_00124 0.31 -1.3
135,016 - CCNA_00124 0.32 +0.2
135,024 + CCNA_00124 0.34 +3.6
135,033 - CCNA_00124 0.35 -0.2
135,035 + CCNA_00124 0.36 -2.7
135,038 - CCNA_00124 0.36 +0.9
135,043 - CCNA_00124 0.37 +0.4
135,066 + CCNA_00124 0.41 +0.3
135,081 + CCNA_00124 0.43 -0.8
135,121 - CCNA_00124 0.50 +0.6
135,121 - CCNA_00124 0.50 +0.7
135,121 - CCNA_00124 0.50 -3.5
135,121 - CCNA_00124 0.50 -1.2
135,162 - CCNA_00124 0.57 -0.7
135,165 + CCNA_00124 0.58 -2.9
135,165 + CCNA_00124 0.58 -2.5
135,173 - CCNA_00124 0.59 +1.2
135,201 + CCNA_00124 0.64 +0.6
135,233 + CCNA_00124 0.69 -1.0
135,242 - CCNA_00124 0.71 +0.2
135,243 + CCNA_00124 0.71 +0.6
135,257 - CCNA_00124 0.73 +0.8
135,319 - CCNA_00124 0.84 +1.4
135,370 + -1.9
135,374 + +0.7
135,378 - -0.0
135,382 - +2.6
135,443 + +2.0
135,456 - +1.4
135,610 + CCNA_00125 0.15 -2.4
135,613 - CCNA_00125 0.16 -2.4
135,618 - CCNA_00125 0.16 -1.1
135,632 + CCNA_00125 0.18 -2.2
135,647 - CCNA_00125 0.21 -1.4
135,652 - CCNA_00125 0.21 -2.0
135,652 - CCNA_00125 0.21 +0.4
135,652 - CCNA_00125 0.21 -0.4
135,652 - CCNA_00125 0.21 -0.6
135,657 - CCNA_00125 0.22 +0.2
135,683 - CCNA_00125 0.26 -0.9
135,695 - CCNA_00125 0.28 -0.5
135,743 + CCNA_00125 0.35 +2.6
135,750 + CCNA_00125 0.36 -2.0
135,750 + CCNA_00125 0.36 -0.6
135,750 + CCNA_00125 0.36 -3.3
135,750 + CCNA_00125 0.36 -0.6
135,758 - CCNA_00125 0.37 -1.2
135,758 - CCNA_00125 0.37 -0.5
135,758 - CCNA_00125 0.37 -2.2
135,787 - CCNA_00125 0.42 -0.6
135,868 - CCNA_00125 0.54 -2.9
135,868 - CCNA_00125 0.54 +1.2
135,870 + CCNA_00125 0.54 -2.6
135,878 - CCNA_00125 0.55 -0.7
135,950 - CCNA_00125 0.66 +1.0
135,955 - CCNA_00125 0.67 -1.5
135,966 + CCNA_00125 0.68 +1.0
135,971 + CCNA_00125 0.69 +0.0
135,971 + CCNA_00125 0.69 +0.0
135,971 + CCNA_00125 0.69 +0.6
135,974 - CCNA_00125 0.70 -2.5
135,979 - CCNA_00125 0.70 -2.1
135,979 - CCNA_00125 0.70 -1.0
135,979 - CCNA_00125 0.70 -0.2
135,979 - CCNA_00125 0.70 -1.3
135,986 + CCNA_00125 0.71 -1.8
135,994 - CCNA_00125 0.72 -1.3
135,994 - CCNA_00125 0.72 -1.8
135,994 - CCNA_00125 0.72 -1.5
135,994 - CCNA_00125 0.72 -0.7
135,994 - CCNA_00125 0.72 -2.1
136,017 + CCNA_00125 0.76 +0.6
136,102 - CCNA_00125 0.89 -0.2
136,148 + -1.7
136,148 + -1.0
136,148 + -0.4
136,148 + +0.7
136,148 + -3.1
136,156 - +0.6
136,156 - +1.8
136,156 - -2.5
136,156 - -0.9
136,156 - -0.5
136,156 - +0.5
136,156 - -0.4
136,156 - -1.6
136,156 - -2.3
136,189 - -0.4
136,196 - -0.4
136,196 - -0.6
136,196 - -2.7
136,213 - -2.1
136,215 + +0.2
136,215 + -0.8
136,215 + -0.4
136,215 + -1.8
136,220 + +2.6
136,223 - +0.9
136,266 + CCNA_00126 0.20 +0.0
136,310 + CCNA_00126 0.31 -1.8
136,318 - CCNA_00126 0.33 -0.7
136,326 - CCNA_00126 0.35 +0.6
136,336 + CCNA_00126 0.37 +2.6
136,341 + CCNA_00126 0.38 -1.1
136,341 + CCNA_00126 0.38 -1.2
136,368 + CCNA_00126 0.45 -1.5
136,368 + CCNA_00126 0.45 -0.1
136,368 + CCNA_00126 0.45 +0.5
136,368 + CCNA_00126 0.45 -1.8
136,368 + CCNA_00126 0.45 -0.9
136,376 - CCNA_00126 0.47 -0.3
136,376 - CCNA_00126 0.47 -0.7
136,376 - CCNA_00126 0.47 -0.9
136,376 - CCNA_00126 0.47 +1.5
136,376 - CCNA_00126 0.47 +1.9
136,387 + CCNA_00126 0.50 -0.6
136,414 - CCNA_00126 0.56 -1.0
136,425 + CCNA_00126 0.59 +0.3
136,433 - CCNA_00126 0.61 +2.0
136,433 - CCNA_00126 0.61 -0.4
136,474 + CCNA_00126 0.71 -1.4
136,533 + CCNA_00126 0.86 +0.6
136,547 + CCNA_00126 0.89 +1.6
136,580 + +0.2
136,612 + -1.6
136,649 - -1.2
136,649 - -1.1
136,654 - -0.2
136,679 + -0.1
136,679 + +2.8
136,687 - -1.5
136,687 - +0.4
136,687 - +2.5
136,687 - +1.6
136,742 + +1.6
136,749 - -1.3
136,794 + -1.4
136,800 + -3.5
136,801 + -1.0
136,801 + -0.6
136,842 - CCNA_00127 0.15 +1.4
136,852 - CCNA_00127 0.20 -0.6
136,852 - CCNA_00127 0.20 -2.6
136,859 - CCNA_00127 0.24 -0.8
136,868 - CCNA_00127 0.28 -1.3
136,870 + CCNA_00127 0.29 +0.6
136,875 - CCNA_00127 0.32 -1.1
136,913 - CCNA_00127 0.51 -1.8
136,924 - CCNA_00127 0.56 +0.6
136,932 - CCNA_00127 0.60 -1.7
136,934 + CCNA_00127 0.61 -0.7
136,942 - CCNA_00127 0.65 -0.3
136,944 - CCNA_00127 0.66 -0.7
136,992 - +0.0
137,014 - -1.6
137,075 - -0.4
137,083 - -0.4
137,086 + -0.0
137,091 + +1.6
137,114 - -1.5

Or see this region's nucleotide sequence