Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00109

Experiment: PYE_noCalcium 30C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 30C survival rep2 28 days
118,162	+				+0.6
118,165	-				+0.4
118,170	-				-0.2
118,170	-				-0.6
118,175	-				+0.6
118,177	+				+2.6
118,231	-				-0.5
118,254	-				-0.6
118,264	-				+0.5
118,290	-		CCNA_00107	0.15	-1.9
118,461	-				+0.8
118,461	-				-3.3
118,461	-				-0.3
118,465	+				-2.6
118,521	-				-1.7
118,521	-				-0.2
118,561	+		CCNA_00108	0.14	-1.8
118,615	+		CCNA_00108	0.22	-2.4
118,615	+		CCNA_00108	0.22	-2.6
118,623	-		CCNA_00108	0.23	-2.2
118,628	-		CCNA_00108	0.24	+1.0
118,629	+		CCNA_00108	0.24	-2.9
118,687	-		CCNA_00108	0.32	-3.0
118,699	-				-0.4
118,752	+		CCNA_00108	0.42	-0.9
118,762	+		CCNA_00108	0.44	-0.6
118,770	-		CCNA_00108	0.45	+2.6
118,770	-		CCNA_00108	0.45	-1.8
118,796	-		CCNA_00108	0.49	-1.5
118,817	+		CCNA_00108	0.52	-2.3
118,825	-		CCNA_00108	0.53	-2.2
118,828	+		CCNA_00108	0.53	-2.7
118,836	-		CCNA_00108	0.54	-0.6
118,848	+		CCNA_00108	0.56	-2.8
118,860	-		CCNA_00108	0.58	-3.1
118,881	-		CCNA_00108	0.61	-1.4
118,881	-		CCNA_00108	0.61	-1.3
118,893	+		CCNA_00108	0.63	-1.7
118,906	+		CCNA_00108	0.65	-3.4
118,914	-		CCNA_00108	0.66	-1.5
118,925	+		CCNA_00108	0.68	+0.3
118,928	-		CCNA_00108	0.68	-3.0
118,928	-		CCNA_00108	0.68	-2.9
118,933	-		CCNA_00108	0.69	-1.2
118,973	+		CCNA_00108	0.75	-3.2
119,018	+		CCNA_00108	0.81	-3.1
119,026	-		CCNA_00108	0.82	-0.6
119,033	+		CCNA_00108	0.83	-2.5
119,033	+		CCNA_00108	0.83	-0.8
119,041	-		CCNA_00108	0.85	-2.2
119,054	+		CCNA_00108	0.87	-1.3
119,059	+		CCNA_00108	0.87	-1.5
119,080	-				-2.5
119,080	-				-0.4
119,102	-				-3.0
119,104	+				-2.7
119,151	-				-1.5
119,151	-				-1.6
119,153	+				-1.7
119,170	-				-1.9
119,171	-				-1.4
119,173	+				-0.9
119,178	+				-4.2
119,190	-				-2.4
119,191	-				-2.3
119,197	+				-3.0
119,198	+				-1.5
119,207	+				-1.3
119,215	-				-2.1
119,235	-				-1.2
119,239	+				-2.1
119,247	-				+1.6
119,311	+		CCNA_00109	0.17	-3.6
119,337	+		CCNA_00109	0.20	-2.9
119,344	+		CCNA_00109	0.20	-1.4
119,344	+		CCNA_00109	0.20	-2.4
119,344	+		CCNA_00109	0.20	-3.2
119,344	+		CCNA_00109	0.20	-0.6
119,345	-		CCNA_00109	0.21	+0.0
119,345	-		CCNA_00109	0.21	-2.1
119,345	-		CCNA_00109	0.21	-3.3
119,352	-		CCNA_00109	0.21	-0.1
119,352	-		CCNA_00109	0.21	+2.2
119,354	+		CCNA_00109	0.22	-3.4
119,407	-		CCNA_00109	0.27	-2.1
119,439	+		CCNA_00109	0.31	-1.1
119,439	+		CCNA_00109	0.31	-1.5
119,439	+		CCNA_00109	0.31	+0.1
119,439	+		CCNA_00109	0.31	-2.7
119,439	+		CCNA_00109	0.31	-4.7
119,447	-		CCNA_00109	0.32	-0.6
119,447	-		CCNA_00109	0.32	-2.1
119,447	-		CCNA_00109	0.32	-1.1
119,447	-		CCNA_00109	0.32	-2.3
119,466	-		CCNA_00109	0.34	-2.2
119,472	-		CCNA_00109	0.35	-3.4
119,512	-		CCNA_00109	0.39	-3.4
119,536	+		CCNA_00109	0.42	-5.2
119,541	+		CCNA_00109	0.42	-0.2
119,544	-		CCNA_00109	0.43	-1.6
119,564	+		CCNA_00109	0.45	-0.7
119,582	-		CCNA_00109	0.47	-1.1
119,598	+		CCNA_00109	0.49	+1.3
119,604	+		CCNA_00109	0.49	-3.2
119,604	+		CCNA_00109	0.49	-2.0
119,604	+		CCNA_00109	0.49	+0.6
119,612	-		CCNA_00109	0.50	-0.5
119,612	-		CCNA_00109	0.50	-0.1
119,612	-		CCNA_00109	0.50	-2.4
119,612	-		CCNA_00109	0.50	-2.6
119,612	-		CCNA_00109	0.50	-0.7
119,612	-		CCNA_00109	0.50	-3.2
119,643	+		CCNA_00109	0.54	-2.5
119,644	+		CCNA_00109	0.54	-4.4
119,651	-		CCNA_00109	0.55	-0.7
119,720	-		CCNA_00109	0.62	-2.7
119,721	-		CCNA_00109	0.62	-1.6
119,721	-		CCNA_00109	0.62	-3.0
119,758	+		CCNA_00109	0.66	-1.9
119,775	+		CCNA_00109	0.68	-0.7
119,783	-		CCNA_00109	0.69	-3.8
119,783	-		CCNA_00109	0.69	-2.0
119,852	+		CCNA_00109	0.77	-2.4
119,929	+		CCNA_00109	0.85	+0.4
119,942	-		CCNA_00109	0.87	+0.1
120,004	+				-3.2
120,004	+				-0.7
120,012	-				-1.5
120,098	-				+1.1
120,218	-				-0.2
120,225	-		CCNA_00110	0.11	-0.4
120,246	-		CCNA_00110	0.15	-2.4
120,246	-		CCNA_00110	0.15	-2.3
120,246	-		CCNA_00110	0.15	-2.4
120,274	+		CCNA_00110	0.21	-0.7
120,305	+		CCNA_00110	0.27	-2.0
120,317	+		CCNA_00110	0.29	+1.0
120,322	+		CCNA_00110	0.30	-2.2
120,325	-		CCNA_00110	0.31	-1.4
120,353	+		CCNA_00110	0.36	-0.2
120,363	+		CCNA_00110	0.38	-3.6
120,363	+		CCNA_00110	0.38	-2.8
120,363	+		CCNA_00110	0.38	+2.6
120,363	+		CCNA_00110	0.38	-1.8
120,363	+		CCNA_00110	0.38	-0.7
120,371	-		CCNA_00110	0.40	-0.2
120,371	-		CCNA_00110	0.40	-2.8
120,371	-		CCNA_00110	0.40	-3.3
120,371	-		CCNA_00110	0.40	-0.2
120,401	+		CCNA_00110	0.46	-0.9
120,441	-		CCNA_00110	0.54	-1.8
120,503	+		CCNA_00110	0.66	-2.9
120,508	+		CCNA_00110	0.67	+0.0
120,511	-		CCNA_00110	0.67	-1.2
120,511	-		CCNA_00110	0.67	-1.3
120,516	-		CCNA_00110	0.68	-3.0
120,523	-		CCNA_00110	0.70	-3.7
120,537	+		CCNA_00110	0.73	-1.0
120,543	-		CCNA_00110	0.74	-2.8
120,545	-		CCNA_00110	0.74	-3.5
120,566	+		CCNA_00110	0.78	-1.2
120,566	+		CCNA_00110	0.78	-1.8
120,566	+		CCNA_00110	0.78	-2.5
120,566	+		CCNA_00110	0.78	-3.0
120,574	+		CCNA_00110	0.80	-0.9
120,574	-		CCNA_00110	0.80	-2.0
120,610	+		CCNA_00110	0.87	+0.0
120,610	+		CCNA_00110	0.87	+0.3
120,618	-		CCNA_00110	0.89	-1.9
120,618	-		CCNA_00110	0.89	-1.1
120,618	-		CCNA_00110	0.89	-0.9
120,629	+				-1.4
120,657	+				+0.3
120,665	-				-0.7
120,670	-				+0.4
120,682	+				-1.7
120,682	+				-2.6
120,682	+				-3.5
120,690	-				-1.0
120,690	-				-0.5
120,692	+				-0.2
120,692	+				-3.0
120,692	+				-1.9
120,692	+				-3.9
120,700	-				-0.9
120,700	-				-0.2
120,707	+				-2.6
120,715	-				-0.2
120,715	-				-1.4
120,719	+				-2.2
120,755	+				+2.6
120,763	+				+1.0
120,787	+				-1.1
120,844	-		CCNA_00111	0.12	-1.7
120,849	-		CCNA_00111	0.13	-3.0
120,863	+		CCNA_00111	0.15	-1.8
120,870	-		CCNA_00111	0.16	-0.7
120,874	+		CCNA_00111	0.16	-2.2
120,887	+		CCNA_00111	0.18	-2.5
120,899	-		CCNA_00111	0.20	-0.2
120,949	-		CCNA_00111	0.26	+0.3
120,973	+		CCNA_00111	0.30	-1.2
121,001	+		CCNA_00111	0.33	-1.7
121,020	+		CCNA_00111	0.36	-1.4
121,028	-		CCNA_00111	0.37	-0.2
121,028	-		CCNA_00111	0.37	+0.0
121,040	+		CCNA_00111	0.39	-0.2
121,048	+		CCNA_00111	0.40	-2.3
121,048	-		CCNA_00111	0.40	+2.6
121,058	+		CCNA_00111	0.41	+0.2
121,058	+		CCNA_00111	0.41	-3.0