Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0608 and DvMF_0609 are separated by 4 nucleotides DvMF_0609 and DvMF_0610 overlap by 4 nucleotides
DvMF_0608: DvMF_0608 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 720,022 to 721,605
_0608
DvMF_0609: DvMF_0609 - Indolepyruvate ferredoxin oxidoreductase (RefSeq), at 721,610 to 722,215
_0609
DvMF_0610: DvMF_0610 - indolepyruvate ferredoxin oxidoreductase, alpha subunit (RefSeq), at 722,212 to 724,101
_0610
Position (kb) 721
722
723 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 721.001 kb on - strand, within DvMF_0608 at 721.160 kb on - strand, within DvMF_0608 at 721.185 kb on - strand, within DvMF_0608 at 721.920 kb on + strand, within DvMF_0609 at 722.002 kb on - strand, within DvMF_0609 at 722.128 kb on - strand, within DvMF_0609 at 722.235 kb on + strand at 722.332 kb on + strand at 722.332 kb on + strand at 722.368 kb on - strand at 722.403 kb on + strand, within DvMF_0610 at 722.541 kb on + strand, within DvMF_0610 at 722.567 kb on + strand, within DvMF_0610 at 722.598 kb on - strand, within DvMF_0610 at 722.607 kb on - strand, within DvMF_0610 at 722.701 kb on - strand, within DvMF_0610 at 722.764 kb on - strand, within DvMF_0610 at 722.845 kb on - strand, within DvMF_0610 at 722.883 kb on - strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.950 kb on - strand, within DvMF_0610
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 721,001 - DvMF_0608 0.62 -4.1 721,160 - DvMF_0608 0.72 -4.9 721,185 - DvMF_0608 0.73 -2.1 721,920 + DvMF_0609 0.51 -1.8 722,002 - DvMF_0609 0.65 -1.0 722,128 - DvMF_0609 0.85 -1.2 722,235 + -0.6 722,332 + -1.5 722,332 + -1.5 722,368 - -0.0 722,403 + DvMF_0610 0.10 -1.4 722,541 + DvMF_0610 0.17 -1.2 722,567 + DvMF_0610 0.19 -1.0 722,598 - DvMF_0610 0.20 -0.6 722,607 - DvMF_0610 0.21 -0.5 722,701 - DvMF_0610 0.26 -0.3 722,764 - DvMF_0610 0.29 -0.4 722,845 - DvMF_0610 0.33 -1.3 722,883 - DvMF_0610 0.36 -1.3 722,912 + DvMF_0610 0.37 -2.7 722,912 + DvMF_0610 0.37 -2.8 722,912 + DvMF_0610 0.37 -1.2 722,912 + DvMF_0610 0.37 -2.3 722,912 + DvMF_0610 0.37 -2.5 722,912 + DvMF_0610 0.37 -2.4 722,912 + DvMF_0610 0.37 -2.7 722,920 - DvMF_0610 0.37 -0.7 722,920 - DvMF_0610 0.37 -1.4 722,920 - DvMF_0610 0.37 -0.9 722,920 - DvMF_0610 0.37 -0.9 722,920 - DvMF_0610 0.37 -1.4 722,920 - DvMF_0610 0.37 -1.5 722,920 - DvMF_0610 0.37 -1.3 722,920 - DvMF_0610 0.37 -1.9 722,920 - DvMF_0610 0.37 -0.9 722,950 - DvMF_0610 0.39 -1.7
Or see this region's nucleotide sequence