Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0470 and DvMF_0471 are separated by 410 nucleotides DvMF_0471 and DvMF_0472 are separated by 9 nucleotides
DvMF_0470: DvMF_0470 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 550,733 to 552,838
_0470
DvMF_0471: DvMF_0471 - DNA repair protein RadA (RefSeq), at 553,249 to 554,727
_0471
DvMF_0472: DvMF_0472 - hypothetical protein (RefSeq), at 554,737 to 555,705
_0472
Position (kb) 553
554
555 Strain fitness (log2 ratio) -1
0
1 at 552.277 kb on + strand, within DvMF_0470 at 552.303 kb on - strand, within DvMF_0470 at 552.590 kb on - strand, within DvMF_0470 at 552.591 kb on + strand, within DvMF_0470 at 552.706 kb on + strand at 552.779 kb on + strand at 552.865 kb on + strand at 553.019 kb on + strand at 553.074 kb on + strand at 553.544 kb on + strand at 553.852 kb on - strand, within DvMF_0471 at 553.862 kb on - strand, within DvMF_0471 at 553.883 kb on + strand, within DvMF_0471 at 553.987 kb on - strand, within DvMF_0471 at 554.171 kb on + strand, within DvMF_0471 at 554.525 kb on - strand, within DvMF_0471 at 554.613 kb on - strand at 554.628 kb on + strand at 554.628 kb on + strand at 554.628 kb on + strand at 554.636 kb on - strand at 554.827 kb on - strand at 554.847 kb on - strand, within DvMF_0472 at 555.112 kb on + strand, within DvMF_0472 at 555.227 kb on - strand, within DvMF_0472 at 555.255 kb on + strand, within DvMF_0472 at 555.315 kb on - strand, within DvMF_0472 at 555.464 kb on + strand, within DvMF_0472 at 555.619 kb on - strand at 555.619 kb on - strand at 555.631 kb on - strand at 555.666 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 552,277 + DvMF_0470 0.73 -0.4 552,303 - DvMF_0470 0.75 -0.3 552,590 - DvMF_0470 0.88 -0.2 552,591 + DvMF_0470 0.88 -0.1 552,706 + -0.4 552,779 + +0.0 552,865 + -0.1 553,019 + -0.6 553,074 + +0.2 553,544 + -0.3 553,852 - DvMF_0471 0.41 -0.4 553,862 - DvMF_0471 0.41 -0.3 553,883 + DvMF_0471 0.43 +0.5 553,987 - DvMF_0471 0.50 -0.3 554,171 + DvMF_0471 0.62 +0.2 554,525 - DvMF_0471 0.86 +0.1 554,613 - -0.6 554,628 + -0.0 554,628 + -0.4 554,628 + -0.5 554,636 - -0.4 554,827 - -0.2 554,847 - DvMF_0472 0.11 -0.2 555,112 + DvMF_0472 0.39 -0.3 555,227 - DvMF_0472 0.51 -0.4 555,255 + DvMF_0472 0.53 -0.4 555,315 - DvMF_0472 0.60 -0.1 555,464 + DvMF_0472 0.75 +0.2 555,619 - -0.0 555,619 - -0.1 555,631 - -0.5 555,666 + -0.1
Or see this region's nucleotide sequence