Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0469 and DvMF_0470 are separated by 371 nucleotides DvMF_0470 and DvMF_0471 are separated by 410 nucleotides
DvMF_0469: DvMF_0469 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 548,535 to 550,361
_0469
DvMF_0470: DvMF_0470 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 550,733 to 552,838
_0470
DvMF_0471: DvMF_0471 - DNA repair protein RadA (RefSeq), at 553,249 to 554,727
_0471
Position (kb) 550
551
552
553 Strain fitness (log2 ratio) -1
0
1 at 549.782 kb on + strand, within DvMF_0469 at 549.859 kb on + strand, within DvMF_0469 at 549.859 kb on + strand, within DvMF_0469 at 549.867 kb on - strand, within DvMF_0469 at 550.533 kb on - strand at 550.788 kb on - strand at 550.940 kb on - strand at 550.946 kb on - strand, within DvMF_0470 at 551.165 kb on - strand, within DvMF_0470 at 551.280 kb on - strand, within DvMF_0470 at 551.571 kb on + strand, within DvMF_0470 at 551.579 kb on - strand, within DvMF_0470 at 552.216 kb on - strand, within DvMF_0470 at 552.277 kb on + strand, within DvMF_0470 at 552.303 kb on - strand, within DvMF_0470 at 552.590 kb on - strand, within DvMF_0470 at 552.591 kb on + strand, within DvMF_0470 at 552.706 kb on + strand at 552.779 kb on + strand at 552.865 kb on + strand at 553.019 kb on + strand at 553.074 kb on + strand at 553.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 549,782 + DvMF_0469 0.68 -1.0 549,859 + DvMF_0469 0.72 -1.2 549,859 + DvMF_0469 0.72 -0.4 549,867 - DvMF_0469 0.73 -0.4 550,533 - -0.2 550,788 - -0.3 550,940 - -0.3 550,946 - DvMF_0470 0.10 -0.3 551,165 - DvMF_0470 0.21 -0.2 551,280 - DvMF_0470 0.26 -0.5 551,571 + DvMF_0470 0.40 -0.4 551,579 - DvMF_0470 0.40 -0.1 552,216 - DvMF_0470 0.70 -0.3 552,277 + DvMF_0470 0.73 -0.4 552,303 - DvMF_0470 0.75 -0.3 552,590 - DvMF_0470 0.88 -0.2 552,591 + DvMF_0470 0.88 -0.1 552,706 + -0.4 552,779 + +0.0 552,865 + -0.1 553,019 + -0.6 553,074 + +0.2 553,544 + -0.3
Or see this region's nucleotide sequence