Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0241 and DvMF_0242 are separated by 82 nucleotides DvMF_0242 and rnc are separated by 642 nucleotides
DvMF_0241: DvMF_0241 - major facilitator superfamily MFS_1 (RefSeq), at 272,588 to 273,805
_0241
DvMF_0242: DvMF_0242 - DRTGG domain protein (RefSeq), at 273,888 to 274,952
_0242
DvMF_0243: rnc - ribonuclease III (RefSeq), at 275,595 to 276,287
rnc
Position (kb) 273
274
275 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 273.113 kb on - strand, within DvMF_0241 at 273.128 kb on + strand, within DvMF_0241 at 273.136 kb on - strand, within DvMF_0241 at 273.268 kb on + strand, within DvMF_0241 at 273.359 kb on - strand, within DvMF_0241 at 273.720 kb on + strand at 273.747 kb on + strand at 273.787 kb on + strand at 273.893 kb on - strand at 274.090 kb on + strand, within DvMF_0242 at 274.264 kb on + strand, within DvMF_0242 at 274.269 kb on + strand, within DvMF_0242 at 274.344 kb on - strand, within DvMF_0242 at 274.390 kb on + strand, within DvMF_0242 at 274.437 kb on + strand, within DvMF_0242 at 274.469 kb on + strand, within DvMF_0242 at 274.469 kb on + strand, within DvMF_0242 at 274.477 kb on - strand, within DvMF_0242 at 274.508 kb on - strand, within DvMF_0242 at 274.592 kb on + strand, within DvMF_0242 at 274.594 kb on - strand, within DvMF_0242 at 275.226 kb on - strand at 275.300 kb on - strand at 275.331 kb on + strand at 275.346 kb on + strand at 275.390 kb on - strand at 275.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 273,113 - DvMF_0241 0.43 -0.0 273,128 + DvMF_0241 0.44 -0.0 273,136 - DvMF_0241 0.45 -0.1 273,268 + DvMF_0241 0.56 -0.3 273,359 - DvMF_0241 0.63 -1.0 273,720 + -0.1 273,747 + -0.3 273,787 + -0.6 273,893 - -0.1 274,090 + DvMF_0242 0.19 -2.5 274,264 + DvMF_0242 0.35 -3.9 274,269 + DvMF_0242 0.36 -2.9 274,344 - DvMF_0242 0.43 -3.6 274,390 + DvMF_0242 0.47 -3.5 274,437 + DvMF_0242 0.52 -3.2 274,469 + DvMF_0242 0.55 -3.2 274,469 + DvMF_0242 0.55 -2.8 274,477 - DvMF_0242 0.55 -2.7 274,508 - DvMF_0242 0.58 -2.8 274,592 + DvMF_0242 0.66 -4.5 274,594 - DvMF_0242 0.66 -3.0 275,226 - -0.1 275,300 - -0.1 275,331 + -0.4 275,346 + -0.3 275,390 - -0.5 275,491 + -0.3
Or see this region's nucleotide sequence