Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0020.1 and DVUA0021 are separated by 48 nucleotides DVUA0021 and DVUA0022 are separated by 8 nucleotides DVUA0022 and DVUA0023 are separated by 98 nucleotides
DVUA0020.1: DVUA0020.1 - SEED: FIG00604339: hypothetical protein, at 25,339 to 26,583
DVUA0020.1
DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693
DVUA0021
DVUA0022: DVUA0022 - ABC transporter, ATP-binding protein (TIGR), at 27,702 to 28,388
DVUA0022
DVUA0023: DVUA0023 - ABC transporter, permease protein, putative (TIGR), at 28,487 to 29,617
DVUA0023
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.713 kb on - strand, within DVUA0020.1 at 25.726 kb on + strand, within DVUA0020.1 at 25.730 kb on - strand, within DVUA0020.1 at 25.751 kb on - strand, within DVUA0020.1 at 25.874 kb on + strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.972 kb on + strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 26.035 kb on - strand, within DVUA0020.1 at 26.120 kb on + strand, within DVUA0020.1 at 26.136 kb on - strand, within DVUA0020.1 at 26.138 kb on + strand, within DVUA0020.1 at 26.245 kb on - strand, within DVUA0020.1 at 26.270 kb on + strand, within DVUA0020.1 at 26.284 kb on + strand, within DVUA0020.1 at 26.366 kb on + strand, within DVUA0020.1 at 26.369 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.384 kb on - strand, within DVUA0020.1 at 26.438 kb on + strand, within DVUA0020.1 at 26.465 kb on + strand at 26.552 kb on + strand at 26.552 kb on + strand at 26.606 kb on + strand at 26.607 kb on - strand at 26.610 kb on + strand at 26.644 kb on + strand at 26.652 kb on - strand at 26.652 kb on - strand at 26.740 kb on + strand, within DVUA0021 at 26.947 kb on + strand, within DVUA0021 at 27.005 kb on - strand, within DVUA0021 at 27.362 kb on - strand, within DVUA0021 at 27.379 kb on - strand, within DVUA0021 at 27.438 kb on - strand, within DVUA0021 at 27.447 kb on - strand, within DVUA0021 at 27.565 kb on + strand, within DVUA0021 at 27.700 kb on + strand at 27.703 kb on - strand at 27.756 kb on + strand at 27.938 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.058 kb on + strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.067 kb on + strand, within DVUA0022 at 28.072 kb on + strand, within DVUA0022 at 28.080 kb on - strand, within DVUA0022 at 28.094 kb on + strand, within DVUA0022 at 28.173 kb on - strand, within DVUA0022 at 28.199 kb on + strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.322 kb on - strand at 28.364 kb on + strand at 28.372 kb on - strand at 28.416 kb on + strand at 28.492 kb on - strand at 28.495 kb on - strand at 28.502 kb on - strand at 28.520 kb on + strand at 28.576 kb on + strand at 28.675 kb on - strand, within DVUA0023 at 28.679 kb on + strand, within DVUA0023
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 25,713 - DVUA0020.1 0.30 -0.2 25,726 + DVUA0020.1 0.31 +0.3 25,730 - DVUA0020.1 0.31 -0.7 25,751 - DVUA0020.1 0.33 -0.0 25,874 + DVUA0020.1 0.43 +0.1 25,882 - DVUA0020.1 0.44 -0.5 25,882 - DVUA0020.1 0.44 -0.0 25,972 + DVUA0020.1 0.51 +0.1 25,981 - DVUA0020.1 0.52 -1.2 25,981 - DVUA0020.1 0.52 -0.2 26,035 - DVUA0020.1 0.56 -1.4 26,120 + DVUA0020.1 0.63 -2.8 26,136 - DVUA0020.1 0.64 +0.2 26,138 + DVUA0020.1 0.64 -0.2 26,245 - DVUA0020.1 0.73 +1.7 26,270 + DVUA0020.1 0.75 +0.9 26,284 + DVUA0020.1 0.76 -0.2 26,366 + DVUA0020.1 0.82 +0.1 26,369 - DVUA0020.1 0.83 -3.1 26,374 - DVUA0020.1 0.83 +0.2 26,374 - DVUA0020.1 0.83 +0.4 26,384 - DVUA0020.1 0.84 -0.4 26,438 + DVUA0020.1 0.88 +1.0 26,465 + +0.0 26,552 + +0.3 26,552 + -0.1 26,606 + +0.1 26,607 - +0.2 26,610 + +0.1 26,644 + -0.4 26,652 - +0.6 26,652 - -0.3 26,740 + DVUA0021 0.10 -0.3 26,947 + DVUA0021 0.30 +0.1 27,005 - DVUA0021 0.35 -1.1 27,362 - DVUA0021 0.69 -0.4 27,379 - DVUA0021 0.70 +0.2 27,438 - DVUA0021 0.76 -0.4 27,447 - DVUA0021 0.77 +0.6 27,565 + DVUA0021 0.88 -0.4 27,700 + +0.8 27,703 - +0.1 27,756 + -0.5 27,938 + DVUA0022 0.34 -0.1 28,046 + DVUA0022 0.50 -0.4 28,046 + DVUA0022 0.50 -0.1 28,046 + DVUA0022 0.50 +1.3 28,046 + DVUA0022 0.50 -0.7 28,046 + DVUA0022 0.50 +0.1 28,054 - DVUA0022 0.51 -0.3 28,054 - DVUA0022 0.51 +0.0 28,054 - DVUA0022 0.51 +0.1 28,058 + DVUA0022 0.52 -0.1 28,066 - DVUA0022 0.53 +0.0 28,066 - DVUA0022 0.53 +0.2 28,066 - DVUA0022 0.53 +0.8 28,066 - DVUA0022 0.53 -1.2 28,067 + DVUA0022 0.53 +0.1 28,072 + DVUA0022 0.54 +2.0 28,080 - DVUA0022 0.55 -0.3 28,094 + DVUA0022 0.57 -0.9 28,173 - DVUA0022 0.69 -2.4 28,199 + DVUA0022 0.72 -3.5 28,259 - DVUA0022 0.81 +0.1 28,259 - DVUA0022 0.81 -0.3 28,277 - DVUA0022 0.84 -2.1 28,277 - DVUA0022 0.84 -0.1 28,322 - -1.6 28,364 + -0.8 28,372 - +0.7 28,416 + +2.1 28,492 - -0.9 28,495 - -0.3 28,502 - -1.1 28,520 + +1.8 28,576 + -1.1 28,675 - DVUA0023 0.17 +0.7 28,679 + DVUA0023 0.17 +2.2
Or see this region's nucleotide sequence