Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0585 and DVU0586 are separated by 375 nucleotides DVU0586 and fdnG-1 are separated by 17 nucleotides
DVU0585: DVU0585 - conserved hypothetical protein (TIGR), at 650,376 to 652,769
DVU0585
DVU0586: DVU0586 - hypothetical protein (TIGR), at 653,145 to 653,369
DVU0586
DVU0587: fdnG-1 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 653,387 to 656,404
fdnG-1
Position (kb) 653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.178 kb on - strand, within DVU0585 at 652.287 kb on - strand, within DVU0585 at 652.311 kb on + strand, within DVU0585 at 652.356 kb on + strand, within DVU0585 at 652.381 kb on + strand, within DVU0585 at 652.399 kb on - strand, within DVU0585 at 652.414 kb on + strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.454 kb on - strand, within DVU0585 at 652.534 kb on - strand at 652.536 kb on + strand at 652.595 kb on - strand at 652.665 kb on + strand at 652.681 kb on - strand at 652.760 kb on - strand at 652.849 kb on - strand at 652.864 kb on + strand at 652.877 kb on - strand at 652.900 kb on + strand at 652.921 kb on - strand at 652.921 kb on - strand at 652.950 kb on + strand at 652.950 kb on + strand at 652.950 kb on + strand at 653.027 kb on + strand at 653.083 kb on - strand at 653.088 kb on - strand at 653.156 kb on + strand at 653.164 kb on - strand at 653.226 kb on - strand, within DVU0586 at 653.302 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.331 kb on - strand, within DVU0586 at 653.389 kb on - strand at 653.544 kb on + strand at 653.559 kb on - strand at 653.585 kb on + strand at 653.589 kb on - strand at 653.697 kb on + strand, within fdnG-1 at 653.790 kb on - strand, within fdnG-1 at 653.793 kb on + strand, within fdnG-1 at 653.888 kb on + strand, within fdnG-1 at 653.893 kb on + strand, within fdnG-1 at 653.920 kb on - strand, within fdnG-1 at 653.928 kb on + strand, within fdnG-1 at 653.930 kb on - strand, within fdnG-1 at 653.932 kb on + strand, within fdnG-1 at 653.957 kb on + strand, within fdnG-1 at 653.975 kb on - strand, within fdnG-1 at 654.152 kb on + strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.173 kb on - strand, within fdnG-1 at 654.240 kb on - strand, within fdnG-1 at 654.259 kb on + strand, within fdnG-1 at 654.286 kb on + strand, within fdnG-1
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 652,178 - DVU0585 0.75 -0.4 652,287 - DVU0585 0.80 -0.4 652,311 + DVU0585 0.81 +0.1 652,356 + DVU0585 0.83 +0.0 652,381 + DVU0585 0.84 +0.7 652,399 - DVU0585 0.85 -0.1 652,414 + DVU0585 0.85 -0.5 652,454 - DVU0585 0.87 +0.3 652,454 - DVU0585 0.87 -0.1 652,454 - DVU0585 0.87 -2.2 652,534 - -0.1 652,536 + -0.0 652,595 - -0.2 652,665 + +0.1 652,681 - -0.1 652,760 - -0.2 652,849 - +0.9 652,864 + -1.3 652,877 - -0.1 652,900 + -0.2 652,921 - +0.5 652,921 - -0.2 652,950 + -0.1 652,950 + -0.7 652,950 + +0.2 653,027 + +0.4 653,083 - +0.4 653,088 - -0.0 653,156 + -0.9 653,164 - +1.2 653,226 - DVU0586 0.36 -0.5 653,302 - DVU0586 0.70 -3.6 653,331 - DVU0586 0.83 +1.9 653,331 - DVU0586 0.83 -0.2 653,389 - -1.3 653,544 + +0.5 653,559 - +0.3 653,585 + +0.1 653,589 - -0.2 653,697 + fdnG-1 DVU0587 0.10 -0.3 653,790 - fdnG-1 DVU0587 0.13 +2.2 653,793 + fdnG-1 DVU0587 0.13 +0.1 653,888 + fdnG-1 DVU0587 0.17 +1.2 653,893 + fdnG-1 DVU0587 0.17 +0.9 653,920 - fdnG-1 DVU0587 0.18 -0.2 653,928 + fdnG-1 DVU0587 0.18 -1.3 653,930 - fdnG-1 DVU0587 0.18 +0.2 653,932 + fdnG-1 DVU0587 0.18 -0.1 653,957 + fdnG-1 DVU0587 0.19 -0.4 653,975 - fdnG-1 DVU0587 0.19 +1.2 654,152 + fdnG-1 DVU0587 0.25 -0.8 654,173 - fdnG-1 DVU0587 0.26 +0.3 654,173 - fdnG-1 DVU0587 0.26 -1.0 654,240 - fdnG-1 DVU0587 0.28 -0.0 654,259 + fdnG-1 DVU0587 0.29 +0.2 654,286 + fdnG-1 DVU0587 0.30 +2.5
Or see this region's nucleotide sequence