Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2390 and tRNA-Asn are separated by 281 nucleotides tRNA-Asn and DVU2391 are separated by 151 nucleotides DVU2391 and DVU2392 are separated by 184 nucleotides DVU2392 and DORF41366 are separated by 112 nucleotides
DVU2390: DVU2390 - TonB domain protein (TIGR), at 2,492,313 to 2,493,221
DVU2390
DVU_tRNA-Asn-2: tRNA-Asn - tRNA with anticodon GTT for Asn (VIMSS-AUTO), at 2,493,503 to 2,493,578
tRNA-Asn
DVU2391: DVU2391 - hypothetical protein (TIGR), at 2,493,730 to 2,493,873
DVU2391
DVU2392: DVU2392 - type III secretion chaperone, CesT family (TIGR), at 2,494,058 to 2,494,510
DVU2392
DORF41366: DORF41366 - SEED: FIG00607184: hypothetical protein, at 2,494,623 to 2,496,719
DORF41366
Position (kb)
2494
2495 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2493.074 kb on - strand, within DVU2390 at 2493.363 kb on + strand at 2493.363 kb on + strand at 2493.376 kb on + strand at 2493.376 kb on + strand at 2493.384 kb on - strand at 2493.675 kb on + strand at 2493.832 kb on - strand, within DVU2391 at 2493.963 kb on + strand at 2493.983 kb on - strand at 2494.051 kb on - strand at 2494.170 kb on + strand, within DVU2392 at 2494.179 kb on - strand, within DVU2392 at 2494.199 kb on + strand, within DVU2392 at 2494.201 kb on - strand, within DVU2392 at 2494.214 kb on - strand, within DVU2392 at 2494.289 kb on - strand, within DVU2392 at 2494.392 kb on - strand, within DVU2392 at 2494.444 kb on + strand, within DVU2392 at 2494.444 kb on + strand, within DVU2392 at 2494.452 kb on - strand, within DVU2392 at 2494.486 kb on - strand at 2494.554 kb on - strand at 2494.554 kb on - strand at 2494.642 kb on + strand at 2494.643 kb on + strand at 2494.650 kb on - strand at 2494.787 kb on + strand at 2494.792 kb on + strand at 2494.811 kb on + strand at 2494.860 kb on - strand, within DORF41366 at 2494.870 kb on + strand, within DORF41366 at 2494.871 kb on - strand, within DORF41366 at 2494.883 kb on + strand, within DORF41366 at 2494.949 kb on - strand, within DORF41366 at 2494.957 kb on + strand, within DORF41366 at 2495.076 kb on + strand, within DORF41366 at 2495.089 kb on - strand, within DORF41366 at 2495.188 kb on - strand, within DORF41366 at 2495.212 kb on + strand, within DORF41366 at 2495.304 kb on - strand, within DORF41366 at 2495.309 kb on - strand, within DORF41366 at 2495.314 kb on - strand, within DORF41366 at 2495.314 kb on - strand, within DORF41366 at 2495.319 kb on - strand, within DORF41366 at 2495.329 kb on - strand, within DORF41366 at 2495.329 kb on - strand, within DORF41366 at 2495.383 kb on - strand, within DORF41366 at 2495.395 kb on - strand, within DORF41366 at 2495.475 kb on - strand, within DORF41366
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 2,493,074 - DVU2390 0.84 -3.6 2,493,363 + -0.1 2,493,363 + -4.9 2,493,376 + -0.3 2,493,376 + -0.4 2,493,384 - +1.5 2,493,675 + -0.7 2,493,832 - DVU2391 0.71 +0.4 2,493,963 + -0.1 2,493,983 - -0.1 2,494,051 - +0.5 2,494,170 + DVU2392 0.25 -1.1 2,494,179 - DVU2392 0.27 -0.1 2,494,199 + DVU2392 0.31 +0.2 2,494,201 - DVU2392 0.32 -0.2 2,494,214 - DVU2392 0.34 +0.0 2,494,289 - DVU2392 0.51 -2.0 2,494,392 - DVU2392 0.74 -4.1 2,494,444 + DVU2392 0.85 -4.4 2,494,444 + DVU2392 0.85 -0.2 2,494,452 - DVU2392 0.87 -0.6 2,494,486 - -0.8 2,494,554 - -0.1 2,494,554 - +1.8 2,494,642 + -1.9 2,494,643 + -0.6 2,494,650 - +0.9 2,494,787 + -0.1 2,494,792 + -1.2 2,494,811 + +0.3 2,494,860 - DORF41366 0.11 -0.3 2,494,870 + DORF41366 0.12 -0.4 2,494,871 - DORF41366 0.12 +0.6 2,494,883 + DORF41366 0.12 -4.3 2,494,949 - DORF41366 0.16 -0.8 2,494,957 + DORF41366 0.16 -1.7 2,495,076 + DORF41366 0.22 +0.1 2,495,089 - DORF41366 0.22 -0.3 2,495,188 - DORF41366 0.27 +0.2 2,495,212 + DORF41366 0.28 -2.3 2,495,304 - DORF41366 0.32 +0.4 2,495,309 - DORF41366 0.33 -2.5 2,495,314 - DORF41366 0.33 +0.1 2,495,314 - DORF41366 0.33 -0.2 2,495,319 - DORF41366 0.33 -1.1 2,495,329 - DORF41366 0.34 -0.2 2,495,329 - DORF41366 0.34 +0.1 2,495,383 - DORF41366 0.36 +0.1 2,495,395 - DORF41366 0.37 -0.7 2,495,475 - DORF41366 0.41 +0.2
Or see this region's nucleotide sequence