Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1697

Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1694 and DVU1695 are separated by 15 nucleotidesDVU1695 and DVU1696 overlap by 8 nucleotidesDVU1696 and DVU1697 are separated by 2 nucleotidesDVU1697 and DORF12810 are separated by 7 nucleotidesDORF12810 and DVU1698 are separated by 34 nucleotides DVU1694: DVU1694 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 1,770,879 to 1,771,088 DVU1694 DVU1695: DVU1695 - tail fiber assembly protein, putative (TIGR), at 1,771,104 to 1,771,613 DVU1695 DVU1696: DVU1696 - hypothetical protein (TIGR), at 1,771,606 to 1,771,974 DVU1696 DVU1697: DVU1697 - hypothetical protein (TIGR), at 1,771,977 to 1,772,234 DVU1697 DORF12810: DORF12810 - no description, at 1,772,242 to 1,773,051 DORF12810 DVU1698: DVU1698 - hypothetical protein (TIGR), at 1,773,086 to 1,773,571 DVU1698 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1771.052 kb on - strand, within DVU1694at 1771.059 kb on + strand, within DVU1694at 1771.124 kb on - strandat 1771.124 kb on - strandat 1771.137 kb on - strandat 1771.183 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.353 kb on - strand, within DVU1695at 1771.492 kb on + strand, within DVU1695at 1771.519 kb on + strand, within DVU1695at 1771.527 kb on - strand, within DVU1695at 1771.527 kb on - strand, within DVU1695at 1771.622 kb on + strandat 1771.628 kb on - strandat 1771.630 kb on - strandat 1771.638 kb on - strandat 1771.715 kb on + strand, within DVU1696at 1771.742 kb on + strand, within DVU1696at 1772.515 kb on - strand, within DORF12810at 1772.537 kb on + strand, within DORF12810at 1772.635 kb on - strand, within DORF12810at 1772.677 kb on + strand, within DORF12810at 1772.769 kb on + strand, within DORF12810at 1772.834 kb on - strand, within DORF12810at 1772.850 kb on + strand, within DORF12810at 1772.941 kb on + strand, within DORF12810at 1772.948 kb on + strand, within DORF12810at 1772.975 kb on + strandat 1773.181 kb on - strand, within DVU1698at 1773.231 kb on - strand, within DVU1698

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM
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1,771,052 - DVU1694 0.82 +0.0
1,771,059 + DVU1694 0.86 -0.1
1,771,124 - -0.2
1,771,124 - -0.5
1,771,137 - -0.6
1,771,183 - DVU1695 0.15 -1.5
1,771,353 - DVU1695 0.49 +0.4
1,771,353 - DVU1695 0.49 -0.2
1,771,353 - DVU1695 0.49 +0.0
1,771,492 + DVU1695 0.76 -0.1
1,771,519 + DVU1695 0.81 -0.9
1,771,527 - DVU1695 0.83 +0.6
1,771,527 - DVU1695 0.83 -1.8
1,771,622 + +0.3
1,771,628 - -0.1
1,771,630 - +0.2
1,771,638 - -0.3
1,771,715 + DVU1696 0.30 -0.3
1,771,742 + DVU1696 0.37 +2.3
1,772,515 - DORF12810 0.34 -0.0
1,772,537 + DORF12810 0.36 +1.3
1,772,635 - DORF12810 0.49 -0.7
1,772,677 + DORF12810 0.54 -0.5
1,772,769 + DORF12810 0.65 +0.0
1,772,834 - DORF12810 0.73 +3.0
1,772,850 + DORF12810 0.75 -0.8
1,772,941 + DORF12810 0.86 +0.1
1,772,948 + DORF12810 0.87 -0.8
1,772,975 + -0.2
1,773,181 - DVU1698 0.20 -0.2
1,773,231 - DVU1698 0.30 +0.1

Or see this region's nucleotide sequence