Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0995

Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0993 and DVU0994 are separated by 272 nucleotidesDVU0994 and DVU0995 are separated by 239 nucleotidesDVU0995 and DVU0996 are separated by 212 nucleotides DVU0993: DVU0993 - hypothetical protein (TIGR), at 1,087,234 to 1,087,956 DVU0993 DVU0994: DVU0994 - hypothetical protein (TIGR), at 1,088,229 to 1,088,408 DVU0994 DVU0995: DVU0995 - ThiJ/PfpI family protein (TIGR), at 1,088,648 to 1,089,235 DVU0995 DVU0996: DVU0996 - hypothetical protein (TIGR), at 1,089,448 to 1,090,323 DVU0996 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -2 -1 0 1 2at 1087.766 kb on + strand, within DVU0993at 1087.792 kb on - strand, within DVU0993at 1087.810 kb on + strand, within DVU0993at 1087.830 kb on + strand, within DVU0993at 1087.962 kb on + strandat 1088.141 kb on + strandat 1088.520 kb on + strandat 1088.751 kb on - strand, within DVU0995at 1088.818 kb on + strand, within DVU0995at 1088.948 kb on - strand, within DVU0995at 1088.948 kb on - strand, within DVU0995at 1089.003 kb on + strand, within DVU0995at 1089.019 kb on - strand, within DVU0995at 1089.021 kb on - strand, within DVU0995at 1089.044 kb on + strand, within DVU0995at 1089.057 kb on + strand, within DVU0995at 1089.351 kb on + strandat 1089.380 kb on - strandat 1089.479 kb on + strandat 1089.489 kb on - strandat 1089.538 kb on - strand, within DVU0996at 1089.571 kb on - strand, within DVU0996at 1089.583 kb on - strand, within DVU0996at 1089.588 kb on - strand, within DVU0996at 1089.624 kb on - strand, within DVU0996at 1089.711 kb on - strand, within DVU0996at 1089.711 kb on - strand, within DVU0996at 1089.720 kb on + strand, within DVU0996at 1089.781 kb on + strand, within DVU0996at 1089.838 kb on + strand, within DVU0996at 1089.846 kb on - strand, within DVU0996at 1089.853 kb on + strand, within DVU0996at 1089.859 kb on - strand, within DVU0996at 1089.864 kb on - strand, within DVU0996at 1089.903 kb on - strand, within DVU0996at 1089.918 kb on + strand, within DVU0996at 1089.926 kb on - strand, within DVU0996at 1089.926 kb on - strand, within DVU0996at 1090.010 kb on + strand, within DVU0996at 1090.031 kb on - strand, within DVU0996at 1090.032 kb on + strand, within DVU0996at 1090.071 kb on + strand, within DVU0996at 1090.097 kb on + strand, within DVU0996at 1090.126 kb on - strand, within DVU0996

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM
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1,087,766 + DVU0993 0.74 +0.5
1,087,792 - DVU0993 0.77 -0.4
1,087,810 + DVU0993 0.80 -0.6
1,087,830 + DVU0993 0.82 +1.0
1,087,962 + +0.0
1,088,141 + -0.1
1,088,520 + -0.9
1,088,751 - DVU0995 0.18 -1.5
1,088,818 + DVU0995 0.29 -0.9
1,088,948 - DVU0995 0.51 -1.3
1,088,948 - DVU0995 0.51 -1.1
1,089,003 + DVU0995 0.60 -2.1
1,089,019 - DVU0995 0.63 +0.0
1,089,021 - DVU0995 0.63 +1.2
1,089,044 + DVU0995 0.67 -0.8
1,089,057 + DVU0995 0.70 -0.9
1,089,351 + -0.8
1,089,380 - -0.1
1,089,479 + +0.1
1,089,489 - -0.0
1,089,538 - DVU0996 0.10 -0.2
1,089,571 - DVU0996 0.14 +0.3
1,089,583 - DVU0996 0.15 -0.1
1,089,588 - DVU0996 0.16 -0.1
1,089,624 - DVU0996 0.20 -0.3
1,089,711 - DVU0996 0.30 -0.3
1,089,711 - DVU0996 0.30 -0.1
1,089,720 + DVU0996 0.31 +2.3
1,089,781 + DVU0996 0.38 -0.1
1,089,838 + DVU0996 0.45 -0.5
1,089,846 - DVU0996 0.45 +0.2
1,089,853 + DVU0996 0.46 -0.4
1,089,859 - DVU0996 0.47 -0.3
1,089,864 - DVU0996 0.47 -0.1
1,089,903 - DVU0996 0.52 +0.5
1,089,918 + DVU0996 0.54 -0.2
1,089,926 - DVU0996 0.55 -0.1
1,089,926 - DVU0996 0.55 -0.9
1,090,010 + DVU0996 0.64 -0.1
1,090,031 - DVU0996 0.67 -0.2
1,090,032 + DVU0996 0.67 -0.1
1,090,071 + DVU0996 0.71 -0.4
1,090,097 + DVU0996 0.74 -0.5
1,090,126 - DVU0996 0.77 +0.1

Or see this region's nucleotide sequence