Experiment: Pyruvate-Sulfite (60-20mM) with Selenate 750uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0822 and tRNA-Ser are separated by 155 nucleotides tRNA-Ser and argJ are separated by 156 nucleotides argJ and secA are separated by 278 nucleotides
DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178
DVU0822
DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428
tRNA-Ser
DVU0823: argJ - Glutamate N-acetyltransferase (EC 2.3.1.35) (from data) , at 911,585 to 912,766
argJ
DVU0825: secA - preprotein translocase, SecA subunit (TIGR), at 913,045 to 915,546
secA
Position (kb)
911
912
913 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 910.619 kb on + strand, within DVU0822 at 910.878 kb on + strand, within DVU0822 at 910.971 kb on - strand, within DVU0822 at 911.587 kb on - strand at 911.661 kb on - strand at 911.719 kb on - strand, within argJ at 911.729 kb on + strand, within argJ at 911.749 kb on - strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.960 kb on - strand, within argJ at 912.086 kb on + strand, within argJ at 912.094 kb on - strand, within argJ at 912.233 kb on + strand, within argJ at 912.252 kb on + strand, within argJ at 912.361 kb on - strand, within argJ at 912.399 kb on + strand, within argJ at 912.505 kb on - strand, within argJ at 912.548 kb on + strand, within argJ at 912.627 kb on + strand, within argJ at 912.635 kb on - strand, within argJ at 912.728 kb on + strand at 912.755 kb on - strand at 912.840 kb on - strand at 912.840 kb on - strand at 912.855 kb on + strand at 912.939 kb on + strand at 912.949 kb on - strand at 913.036 kb on - strand at 913.109 kb on + strand at 913.117 kb on - strand at 913.117 kb on - strand at 913.117 kb on - strand at 913.142 kb on - strand at 913.142 kb on - strand at 913.202 kb on + strand at 913.233 kb on + strand at 913.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Selenate 750uM remove 910,619 + DVU0822 0.15 -1.0 910,878 + DVU0822 0.54 -0.2 910,971 - DVU0822 0.68 +1.0 911,587 - +1.4 911,661 - -0.7 911,719 - argJ DVU0823 0.11 -1.8 911,729 + argJ DVU0823 0.12 -3.2 911,749 - argJ DVU0823 0.14 -0.1 911,761 + argJ DVU0823 0.15 -2.6 911,761 + argJ DVU0823 0.15 -3.4 911,761 + argJ DVU0823 0.15 -1.7 911,960 - argJ DVU0823 0.32 -3.8 912,086 + argJ DVU0823 0.42 -6.5 912,094 - argJ DVU0823 0.43 -4.6 912,233 + argJ DVU0823 0.55 -4.0 912,252 + argJ DVU0823 0.56 -5.4 912,361 - argJ DVU0823 0.66 -4.1 912,399 + argJ DVU0823 0.69 -1.5 912,505 - argJ DVU0823 0.78 -3.1 912,548 + argJ DVU0823 0.81 -4.4 912,627 + argJ DVU0823 0.88 -4.3 912,635 - argJ DVU0823 0.89 -2.6 912,728 + -3.1 912,755 - -1.8 912,840 - -0.6 912,840 - -0.1 912,855 + -0.4 912,939 + -0.5 912,949 - -2.4 913,036 - +1.9 913,109 + +0.2 913,117 - +0.2 913,117 - +0.2 913,117 - -0.0 913,142 - +0.7 913,142 - +0.1 913,202 + +1.5 913,233 + +0.1 913,254 - +0.0
Or see this region's nucleotide sequence