Experiment: BG11 with Cisplatin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0602 and glgC are separated by 4 nucleotides glgC and rpe are separated by 138 nucleotides rpe and Synpcc7942_0605 are separated by 77 nucleotides
Synpcc7942_0602: Synpcc7942_0602 - hypothetical protein, at 590,846 to 591,454
_0602
Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751
glgC
Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633
rpe
Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694
_0605
Position (kb) 591
592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 590.562 kb on + strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.569 kb on - strand at 590.598 kb on + strand at 590.828 kb on + strand at 590.865 kb on + strand at 590.902 kb on + strand at 590.974 kb on + strand, within Synpcc7942_0602 at 591.002 kb on + strand, within Synpcc7942_0602 at 591.002 kb on - strand, within Synpcc7942_0602 at 591.004 kb on + strand, within Synpcc7942_0602 at 591.010 kb on - strand, within Synpcc7942_0602 at 591.012 kb on - strand, within Synpcc7942_0602 at 591.170 kb on + strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.281 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.299 kb on - strand, within Synpcc7942_0602 at 591.303 kb on - strand, within Synpcc7942_0602 at 591.308 kb on - strand, within Synpcc7942_0602 at 591.382 kb on + strand, within Synpcc7942_0602 at 591.390 kb on - strand, within Synpcc7942_0602 at 591.464 kb on - strand at 591.648 kb on + strand, within glgC at 591.795 kb on - strand, within glgC at 591.872 kb on - strand, within glgC at 592.010 kb on - strand, within glgC at 592.383 kb on - strand, within glgC at 592.570 kb on + strand, within glgC at 592.769 kb on - strand at 592.769 kb on - strand at 592.807 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.837 kb on + strand at 592.845 kb on - strand at 592.850 kb on - strand at 592.852 kb on + strand at 592.861 kb on - strand at 592.863 kb on + strand at 592.871 kb on - strand at 592.873 kb on + strand at 592.873 kb on + strand at 592.880 kb on + strand at 592.887 kb on - strand at 592.888 kb on - strand at 592.896 kb on - strand at 592.908 kb on - strand at 592.947 kb on - strand at 592.947 kb on - strand at 593.636 kb on - strand at 593.636 kb on - strand at 593.646 kb on + strand at 593.654 kb on - strand at 593.661 kb on - strand at 593.701 kb on + strand at 593.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Cisplatin 0.1 mg/ml remove 590,562 + -0.5 590,569 - -0.5 590,569 - +0.7 590,569 - -1.1 590,598 + +0.3 590,828 + -0.6 590,865 + -3.5 590,902 + -1.3 590,974 + Synpcc7942_0602 0.21 -2.6 591,002 + Synpcc7942_0602 0.26 -3.4 591,002 - Synpcc7942_0602 0.26 -2.7 591,004 + Synpcc7942_0602 0.26 -2.0 591,010 - Synpcc7942_0602 0.27 -4.2 591,012 - Synpcc7942_0602 0.27 -2.5 591,170 + Synpcc7942_0602 0.53 -0.6 591,281 - Synpcc7942_0602 0.71 -3.4 591,281 - Synpcc7942_0602 0.71 -3.3 591,299 - Synpcc7942_0602 0.74 -3.2 591,299 - Synpcc7942_0602 0.74 -3.1 591,303 - Synpcc7942_0602 0.75 -1.1 591,308 - Synpcc7942_0602 0.76 -1.9 591,382 + Synpcc7942_0602 0.88 -0.9 591,390 - Synpcc7942_0602 0.89 -1.6 591,464 - -1.2 591,648 + glgC Synpcc7942_0603 0.15 -2.4 591,795 - glgC Synpcc7942_0603 0.26 -2.3 591,872 - glgC Synpcc7942_0603 0.32 -2.3 592,010 - glgC Synpcc7942_0603 0.43 -1.8 592,383 - glgC Synpcc7942_0603 0.71 -2.6 592,570 + glgC Synpcc7942_0603 0.86 -2.8 592,769 - -0.4 592,769 - -1.5 592,807 + -4.1 592,837 + -2.1 592,837 + +0.9 592,837 + +0.4 592,845 - +0.1 592,850 - +0.6 592,852 + -0.7 592,861 - -1.5 592,863 + +1.1 592,871 - -0.4 592,873 + +0.2 592,873 + +0.7 592,880 + -0.1 592,887 - -0.0 592,888 - +1.5 592,896 - +0.5 592,908 - +0.5 592,947 - -0.2 592,947 - -1.0 593,636 - -0.0 593,636 - -2.4 593,646 + -0.1 593,654 - +0.5 593,661 - -0.5 593,701 + +1.7 593,703 - -0.1
Or see this region's nucleotide sequence