Strain Fitness in Pantoea sp. MT58 around IAI47_19040

Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19030 and IAI47_19035 are separated by 472 nucleotidesIAI47_19035 and IAI47_19040 are separated by 160 nucleotidesIAI47_19040 and IAI47_19045 are separated by 195 nucleotidesIAI47_19045 and IAI47_19050 are separated by 246 nucleotides IAI47_19030: IAI47_19030 - hypothetical protein, at 37,143 to 37,337 _19030 IAI47_19035: IAI47_19035 - transcriptional regulator, at 37,810 to 38,064 _19035 IAI47_19040: IAI47_19040 - hypothetical protein, at 38,225 to 38,518 _19040 IAI47_19045: IAI47_19045 - two-component-system connector protein YcgZ, at 38,714 to 38,959 _19045 IAI47_19050: IAI47_19050 - hypothetical protein, at 39,206 to 39,499 _19050 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 37.235 kb on + strand, within IAI47_19030at 37.237 kb on + strand, within IAI47_19030at 37.286 kb on + strand, within IAI47_19030at 37.286 kb on + strand, within IAI47_19030at 37.287 kb on - strand, within IAI47_19030at 37.287 kb on - strand, within IAI47_19030at 37.417 kb on + strandat 37.418 kb on - strandat 37.418 kb on - strandat 37.418 kb on - strandat 37.418 kb on - strandat 37.447 kb on + strandat 37.447 kb on + strandat 37.447 kb on + strandat 37.448 kb on - strandat 37.480 kb on + strandat 37.480 kb on + strandat 37.480 kb on + strandat 37.482 kb on + strandat 37.482 kb on + strandat 37.483 kb on - strandat 37.483 kb on - strandat 37.512 kb on - strandat 37.525 kb on + strandat 37.629 kb on + strandat 37.629 kb on + strandat 37.648 kb on + strandat 37.649 kb on - strandat 37.651 kb on + strandat 37.652 kb on - strandat 37.708 kb on + strandat 37.709 kb on - strandat 37.778 kb on + strandat 37.778 kb on + strandat 37.779 kb on - strandat 37.861 kb on - strand, within IAI47_19035at 37.924 kb on - strand, within IAI47_19035at 38.005 kb on + strand, within IAI47_19035at 38.019 kb on + strand, within IAI47_19035at 38.123 kb on + strandat 38.155 kb on + strandat 38.201 kb on + strandat 38.210 kb on + strandat 38.211 kb on - strandat 38.214 kb on + strandat 38.214 kb on + strandat 38.214 kb on + strandat 38.214 kb on + strandat 38.214 kb on + strandat 38.215 kb on - strandat 38.215 kb on - strandat 38.215 kb on - strandat 38.278 kb on + strand, within IAI47_19040at 38.278 kb on + strand, within IAI47_19040at 38.278 kb on + strand, within IAI47_19040at 38.278 kb on + strand, within IAI47_19040at 38.278 kb on + strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.279 kb on - strand, within IAI47_19040at 38.281 kb on + strand, within IAI47_19040at 38.281 kb on + strand, within IAI47_19040at 38.281 kb on + strand, within IAI47_19040at 38.282 kb on - strand, within IAI47_19040at 38.282 kb on - strand, within IAI47_19040at 38.282 kb on - strand, within IAI47_19040at 38.282 kb on - strand, within IAI47_19040at 38.369 kb on + strand, within IAI47_19040at 38.417 kb on + strand, within IAI47_19040at 38.418 kb on - strand, within IAI47_19040at 38.418 kb on - strand, within IAI47_19040at 38.456 kb on + strand, within IAI47_19040at 38.456 kb on + strand, within IAI47_19040at 38.477 kb on + strand, within IAI47_19040at 38.478 kb on - strand, within IAI47_19040at 38.478 kb on - strand, within IAI47_19040at 38.514 kb on + strandat 38.514 kb on + strandat 38.514 kb on + strandat 38.514 kb on + strandat 38.515 kb on - strandat 38.515 kb on - strandat 38.515 kb on - strandat 38.518 kb on + strandat 38.518 kb on + strandat 38.518 kb on + strandat 38.518 kb on + strandat 38.518 kb on + strandat 38.519 kb on - strandat 38.519 kb on - strandat 38.519 kb on - strandat 38.563 kb on + strandat 38.564 kb on - strandat 38.597 kb on - strandat 38.609 kb on + strandat 38.609 kb on + strandat 38.609 kb on + strandat 38.621 kb on + strandat 38.621 kb on + strandat 38.621 kb on + strandat 38.621 kb on + strandat 38.622 kb on - strandat 38.626 kb on - strandat 38.626 kb on - strandat 38.631 kb on - strandat 38.631 kb on - strandat 38.631 kb on - strandat 38.631 kb on - strandat 38.652 kb on + strandat 38.652 kb on + strandat 38.676 kb on + strandat 38.676 kb on + strandat 38.677 kb on - strandat 38.677 kb on - strandat 38.697 kb on - strandat 38.697 kb on - strandat 38.715 kb on + strandat 38.715 kb on + strandat 38.716 kb on - strandat 38.822 kb on - strand, within IAI47_19045at 38.833 kb on + strand, within IAI47_19045at 38.834 kb on - strand, within IAI47_19045at 38.834 kb on - strand, within IAI47_19045at 38.834 kb on - strand, within IAI47_19045at 38.896 kb on + strand, within IAI47_19045at 38.910 kb on + strand, within IAI47_19045at 38.921 kb on - strand, within IAI47_19045at 38.926 kb on + strand, within IAI47_19045at 39.030 kb on + strandat 39.135 kb on + strandat 39.142 kb on - strandat 39.156 kb on + strandat 39.157 kb on - strandat 39.174 kb on - strandat 39.187 kb on + strandat 39.188 kb on - strandat 39.207 kb on + strandat 39.207 kb on + strandat 39.207 kb on + strandat 39.307 kb on + strand, within IAI47_19050at 39.308 kb on - strand, within IAI47_19050at 39.339 kb on + strand, within IAI47_19050at 39.340 kb on - strand, within IAI47_19050at 39.340 kb on - strand, within IAI47_19050at 39.345 kb on - strand, within IAI47_19050at 39.345 kb on - strand, within IAI47_19050at 39.393 kb on - strand, within IAI47_19050at 39.401 kb on - strand, within IAI47_19050at 39.436 kb on + strand, within IAI47_19050at 39.436 kb on + strand, within IAI47_19050

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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37,235 + IAI47_19030 0.47 +0.9
37,237 + IAI47_19030 0.48 +0.5
37,286 + IAI47_19030 0.73 +0.2
37,286 + IAI47_19030 0.73 +0.4
37,287 - IAI47_19030 0.74 -1.8
37,287 - IAI47_19030 0.74 -0.3
37,417 + -0.9
37,418 - +0.5
37,418 - +0.2
37,418 - -0.4
37,418 - +0.8
37,447 + -1.2
37,447 + -0.6
37,447 + +1.6
37,448 - +0.1
37,480 + +1.1
37,480 + +0.7
37,480 + +1.8
37,482 + -1.3
37,482 + +0.5
37,483 - -0.6
37,483 - -2.2
37,512 - -0.3
37,525 + +1.5
37,629 + -1.2
37,629 + +1.2
37,648 + +1.5
37,649 - +0.0
37,651 + -1.4
37,652 - -0.0
37,708 + +0.6
37,709 - -0.9
37,778 + +0.8
37,778 + -0.2
37,779 - -0.5
37,861 - IAI47_19035 0.20 +3.3
37,924 - IAI47_19035 0.45 +1.7
38,005 + IAI47_19035 0.76 -1.5
38,019 + IAI47_19035 0.82 -1.5
38,123 + +0.0
38,155 + +5.3
38,201 + -0.1
38,210 + -0.6
38,211 - -0.2
38,214 + -0.1
38,214 + -1.0
38,214 + -0.3
38,214 + -1.3
38,214 + +0.7
38,215 - +5.4
38,215 - +5.2
38,215 - +2.1
38,278 + IAI47_19040 0.18 -0.2
38,278 + IAI47_19040 0.18 -0.2
38,278 + IAI47_19040 0.18 -0.2
38,278 + IAI47_19040 0.18 +1.1
38,278 + IAI47_19040 0.18 -2.0
38,279 - IAI47_19040 0.18 +1.5
38,279 - IAI47_19040 0.18 +2.2
38,279 - IAI47_19040 0.18 +1.5
38,279 - IAI47_19040 0.18 +1.2
38,279 - IAI47_19040 0.18 +0.8
38,279 - IAI47_19040 0.18 +2.7
38,279 - IAI47_19040 0.18 +0.7
38,281 + IAI47_19040 0.19 +0.2
38,281 + IAI47_19040 0.19 +0.0
38,281 + IAI47_19040 0.19 +0.0
38,282 - IAI47_19040 0.19 +2.2
38,282 - IAI47_19040 0.19 +1.3
38,282 - IAI47_19040 0.19 +1.3
38,282 - IAI47_19040 0.19 +0.3
38,369 + IAI47_19040 0.49 +0.8
38,417 + IAI47_19040 0.65 -0.5
38,418 - IAI47_19040 0.66 -0.5
38,418 - IAI47_19040 0.66 +1.5
38,456 + IAI47_19040 0.79 +0.2
38,456 + IAI47_19040 0.79 -1.6
38,477 + IAI47_19040 0.86 -1.4
38,478 - IAI47_19040 0.86 +1.4
38,478 - IAI47_19040 0.86 +2.0
38,514 + +1.2
38,514 + +0.3
38,514 + -0.4
38,514 + -1.7
38,515 - +1.2
38,515 - +2.1
38,515 - +0.8
38,518 + -1.3
38,518 + -1.6
38,518 + -1.8
38,518 + +1.3
38,518 + +2.2
38,519 - +1.1
38,519 - +0.8
38,519 - +1.2
38,563 + -0.8
38,564 - +1.6
38,597 - +2.4
38,609 + +0.5
38,609 + -1.8
38,609 + +0.0
38,621 + -0.9
38,621 + -1.8
38,621 + +0.8
38,621 + +0.2
38,622 - +1.3
38,626 - +1.3
38,626 - +1.2
38,631 - +2.1
38,631 - -0.1
38,631 - +1.4
38,631 - +1.0
38,652 + +0.5
38,652 + +0.8
38,676 + -1.1
38,676 + +1.0
38,677 - +2.6
38,677 - +1.4
38,697 - +0.8
38,697 - -0.2
38,715 + +0.5
38,715 + -1.1
38,716 - +0.1
38,822 - IAI47_19045 0.44 +1.4
38,833 + IAI47_19045 0.48 +0.0
38,834 - IAI47_19045 0.49 +1.1
38,834 - IAI47_19045 0.49 +2.2
38,834 - IAI47_19045 0.49 +1.9
38,896 + IAI47_19045 0.74 +0.9
38,910 + IAI47_19045 0.80 +0.5
38,921 - IAI47_19045 0.84 +0.7
38,926 + IAI47_19045 0.86 +0.6
39,030 + -1.6
39,135 + +0.1
39,142 - +0.2
39,156 + -0.1
39,157 - +0.9
39,174 - -1.0
39,187 + +0.3
39,188 - -0.3
39,207 + -0.6
39,207 + -0.9
39,207 + -0.8
39,307 + IAI47_19050 0.34 +0.4
39,308 - IAI47_19050 0.35 +0.8
39,339 + IAI47_19050 0.45 +0.2
39,340 - IAI47_19050 0.46 +1.2
39,340 - IAI47_19050 0.46 -0.1
39,345 - IAI47_19050 0.47 +1.8
39,345 - IAI47_19050 0.47 +1.3
39,393 - IAI47_19050 0.64 +1.1
39,401 - IAI47_19050 0.66 +1.9
39,436 + IAI47_19050 0.78 +0.8
39,436 + IAI47_19050 0.78 +0.2

Or see this region's nucleotide sequence