Experiment: Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04810 and IAI47_04815 are separated by 84 nucleotides IAI47_04815 and IAI47_04820 are separated by 122 nucleotides IAI47_04820 and IAI47_04825 are separated by 59 nucleotides
IAI47_04810: IAI47_04810 - DNA repair protein RecN, at 1,009,043 to 1,010,704
_04810
IAI47_04815: IAI47_04815 - NAD(+) kinase, at 1,010,789 to 1,011,667
_04815
IAI47_04820: IAI47_04820 - nucleotide exchange factor GrpE, at 1,011,790 to 1,012,371
_04820
IAI47_04825: IAI47_04825 - uracil-DNA glycosylase, at 1,012,431 to 1,013,111
_04825
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1009.792 kb on + strand, within IAI47_04810 at 1009.792 kb on + strand, within IAI47_04810 at 1009.793 kb on - strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.809 kb on + strand, within IAI47_04810 at 1009.828 kb on + strand, within IAI47_04810 at 1009.845 kb on + strand, within IAI47_04810 at 1009.845 kb on + strand, within IAI47_04810 at 1009.845 kb on + strand, within IAI47_04810 at 1009.966 kb on - strand, within IAI47_04810 at 1009.966 kb on - strand, within IAI47_04810 at 1010.003 kb on + strand, within IAI47_04810 at 1010.004 kb on - strand, within IAI47_04810 at 1010.051 kb on - strand, within IAI47_04810 at 1010.064 kb on + strand, within IAI47_04810 at 1010.064 kb on + strand, within IAI47_04810 at 1010.064 kb on + strand, within IAI47_04810 at 1010.064 kb on + strand, within IAI47_04810 at 1010.064 kb on + strand, within IAI47_04810 at 1010.065 kb on - strand, within IAI47_04810 at 1010.065 kb on - strand, within IAI47_04810 at 1010.065 kb on - strand, within IAI47_04810 at 1010.085 kb on + strand, within IAI47_04810 at 1010.085 kb on + strand, within IAI47_04810 at 1010.086 kb on - strand, within IAI47_04810 at 1010.130 kb on + strand, within IAI47_04810 at 1010.217 kb on + strand, within IAI47_04810 at 1010.217 kb on + strand, within IAI47_04810 at 1010.218 kb on - strand, within IAI47_04810 at 1010.218 kb on - strand, within IAI47_04810 at 1010.259 kb on + strand, within IAI47_04810 at 1010.259 kb on + strand, within IAI47_04810 at 1010.259 kb on + strand, within IAI47_04810 at 1010.260 kb on - strand, within IAI47_04810 at 1010.260 kb on - strand, within IAI47_04810 at 1010.293 kb on + strand, within IAI47_04810 at 1010.293 kb on + strand, within IAI47_04810 at 1010.337 kb on - strand, within IAI47_04810 at 1010.386 kb on + strand, within IAI47_04810 at 1010.386 kb on + strand, within IAI47_04810 at 1010.459 kb on - strand, within IAI47_04810 at 1010.459 kb on - strand, within IAI47_04810 at 1010.494 kb on + strand, within IAI47_04810 at 1010.494 kb on + strand, within IAI47_04810 at 1010.494 kb on + strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.495 kb on - strand, within IAI47_04810 at 1010.596 kb on + strand at 1010.597 kb on - strand at 1010.626 kb on + strand at 1010.626 kb on + strand at 1010.626 kb on + strand at 1010.626 kb on + strand at 1010.627 kb on - strand at 1010.627 kb on - strand at 1010.627 kb on - strand at 1010.704 kb on + strand at 1010.704 kb on + strand at 1010.704 kb on + strand at 1010.704 kb on + strand at 1010.704 kb on + strand at 1010.704 kb on + strand at 1010.705 kb on - strand at 1010.705 kb on - strand at 1010.723 kb on - strand at 1010.748 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.684 kb on - strand at 1011.685 kb on + strand at 1011.685 kb on + strand at 1011.685 kb on + strand at 1011.685 kb on + strand at 1011.685 kb on + strand at 1011.686 kb on - strand at 1011.686 kb on - strand at 1011.686 kb on - strand at 1011.686 kb on - strand at 1011.712 kb on - strand at 1011.712 kb on - strand at 1011.712 kb on - strand at 1011.712 kb on - strand at 1011.733 kb on - strand at 1011.733 kb on - strand at 1011.733 kb on - strand at 1011.747 kb on + strand at 1011.747 kb on + strand at 1011.747 kb on + strand at 1012.356 kb on + strand at 1012.356 kb on + strand at 1012.357 kb on - strand at 1012.362 kb on + strand at 1012.363 kb on - strand at 1012.589 kb on + strand, within IAI47_04825 at 1012.590 kb on - strand, within IAI47_04825 at 1012.590 kb on - strand, within IAI47_04825 at 1012.590 kb on - strand, within IAI47_04825 at 1012.590 kb on - strand, within IAI47_04825
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 1,009,792 + IAI47_04810 0.45 -1.3 1,009,792 + IAI47_04810 0.45 -0.5 1,009,793 - IAI47_04810 0.45 +2.3 1,009,809 + IAI47_04810 0.46 -0.2 1,009,809 + IAI47_04810 0.46 +0.7 1,009,809 + IAI47_04810 0.46 -1.9 1,009,809 + IAI47_04810 0.46 +1.7 1,009,809 + IAI47_04810 0.46 -0.6 1,009,809 + IAI47_04810 0.46 -1.8 1,009,828 + IAI47_04810 0.47 -1.6 1,009,845 + IAI47_04810 0.48 -1.7 1,009,845 + IAI47_04810 0.48 -1.2 1,009,845 + IAI47_04810 0.48 -1.1 1,009,966 - IAI47_04810 0.56 -1.7 1,009,966 - IAI47_04810 0.56 +0.0 1,010,003 + IAI47_04810 0.58 +0.5 1,010,004 - IAI47_04810 0.58 +1.3 1,010,051 - IAI47_04810 0.61 +0.1 1,010,064 + IAI47_04810 0.61 -1.8 1,010,064 + IAI47_04810 0.61 -0.9 1,010,064 + IAI47_04810 0.61 +0.6 1,010,064 + IAI47_04810 0.61 +0.3 1,010,064 + IAI47_04810 0.61 -0.8 1,010,065 - IAI47_04810 0.61 +0.9 1,010,065 - IAI47_04810 0.61 +1.3 1,010,065 - IAI47_04810 0.61 -0.4 1,010,085 + IAI47_04810 0.63 -0.3 1,010,085 + IAI47_04810 0.63 +0.5 1,010,086 - IAI47_04810 0.63 +0.2 1,010,130 + IAI47_04810 0.65 -0.3 1,010,217 + IAI47_04810 0.71 +0.0 1,010,217 + IAI47_04810 0.71 +0.5 1,010,218 - IAI47_04810 0.71 -0.7 1,010,218 - IAI47_04810 0.71 -0.3 1,010,259 + IAI47_04810 0.73 -0.0 1,010,259 + IAI47_04810 0.73 -1.3 1,010,259 + IAI47_04810 0.73 -0.2 1,010,260 - IAI47_04810 0.73 +1.1 1,010,260 - IAI47_04810 0.73 -2.1 1,010,293 + IAI47_04810 0.75 +0.0 1,010,293 + IAI47_04810 0.75 -0.8 1,010,337 - IAI47_04810 0.78 +0.7 1,010,386 + IAI47_04810 0.81 -0.1 1,010,386 + IAI47_04810 0.81 -2.1 1,010,459 - IAI47_04810 0.85 +0.3 1,010,459 - IAI47_04810 0.85 +0.5 1,010,494 + IAI47_04810 0.87 -0.1 1,010,494 + IAI47_04810 0.87 +1.2 1,010,494 + IAI47_04810 0.87 -0.9 1,010,495 - IAI47_04810 0.87 +0.5 1,010,495 - IAI47_04810 0.87 +4.9 1,010,495 - IAI47_04810 0.87 +1.0 1,010,495 - IAI47_04810 0.87 -2.1 1,010,495 - IAI47_04810 0.87 -1.2 1,010,495 - IAI47_04810 0.87 +0.6 1,010,495 - IAI47_04810 0.87 +0.7 1,010,596 + -1.0 1,010,597 - -0.5 1,010,626 + +0.8 1,010,626 + -1.5 1,010,626 + +0.5 1,010,626 + +0.7 1,010,627 - +0.5 1,010,627 - -1.7 1,010,627 - -0.4 1,010,704 + +0.7 1,010,704 + -2.1 1,010,704 + +0.4 1,010,704 + -2.1 1,010,704 + -0.3 1,010,704 + -2.2 1,010,705 - -0.2 1,010,705 - +0.7 1,010,723 - +4.4 1,010,748 - +1.5 1,011,684 - +0.9 1,011,684 - +0.4 1,011,684 - -1.5 1,011,684 - -1.9 1,011,684 - +0.5 1,011,684 - +1.7 1,011,684 - +2.0 1,011,684 - +1.3 1,011,685 + +1.5 1,011,685 + -0.4 1,011,685 + +0.0 1,011,685 + -0.3 1,011,685 + -0.2 1,011,686 - +0.6 1,011,686 - +0.0 1,011,686 - +0.5 1,011,686 - -0.5 1,011,712 - -0.1 1,011,712 - -0.0 1,011,712 - -0.7 1,011,712 - +0.3 1,011,733 - -0.8 1,011,733 - -0.2 1,011,733 - +0.2 1,011,747 + +1.7 1,011,747 + +1.1 1,011,747 + +2.2 1,012,356 + -1.5 1,012,356 + +0.6 1,012,357 - -1.8 1,012,362 + +0.1 1,012,363 - -1.6 1,012,589 + IAI47_04825 0.23 -1.6 1,012,590 - IAI47_04825 0.23 -1.2 1,012,590 - IAI47_04825 0.23 +0.6 1,012,590 - IAI47_04825 0.23 -0.9 1,012,590 - IAI47_04825 0.23 +0.3
Or see this region's nucleotide sequence