Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06408

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06406 and H281DRAFT_06407 overlap by 4 nucleotidesH281DRAFT_06407 and H281DRAFT_06408 are separated by 375 nucleotidesH281DRAFT_06408 and H281DRAFT_06409 are separated by 488 nucleotides H281DRAFT_06406: H281DRAFT_06406 - D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7), at 2,931 to 4,691 _06406 H281DRAFT_06407: H281DRAFT_06407 - Predicted transcriptional regulator, at 4,688 to 5,071 _06407 H281DRAFT_06408: H281DRAFT_06408 - transcriptional regulator, LacI family, at 5,447 to 6,466 _06408 H281DRAFT_06409: H281DRAFT_06409 - Tetratricopeptide repeat-containing protein, at 6,955 to 7,488 _06409 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.585 kb on - strandat 4.697 kb on - strandat 4.888 kb on + strand, within H281DRAFT_06407at 4.888 kb on + strand, within H281DRAFT_06407at 4.889 kb on - strand, within H281DRAFT_06407at 4.889 kb on - strand, within H281DRAFT_06407at 4.893 kb on - strand, within H281DRAFT_06407at 4.893 kb on - strand, within H281DRAFT_06407at 4.928 kb on + strand, within H281DRAFT_06407at 4.928 kb on + strand, within H281DRAFT_06407at 4.938 kb on + strand, within H281DRAFT_06407at 4.938 kb on + strand, within H281DRAFT_06407at 4.938 kb on + strand, within H281DRAFT_06407at 4.938 kb on + strand, within H281DRAFT_06407at 4.938 kb on + strand, within H281DRAFT_06407at 4.942 kb on + strand, within H281DRAFT_06407at 4.943 kb on - strand, within H281DRAFT_06407at 4.943 kb on - strand, within H281DRAFT_06407at 5.010 kb on - strand, within H281DRAFT_06407at 5.108 kb on + strandat 5.370 kb on + strandat 5.370 kb on + strandat 5.445 kb on + strandat 5.445 kb on + strandat 5.445 kb on + strandat 5.448 kb on + strandat 5.466 kb on + strandat 5.467 kb on - strandat 5.577 kb on + strand, within H281DRAFT_06408at 5.577 kb on + strand, within H281DRAFT_06408at 5.635 kb on + strand, within H281DRAFT_06408at 5.636 kb on - strand, within H281DRAFT_06408at 5.637 kb on + strand, within H281DRAFT_06408at 5.637 kb on + strand, within H281DRAFT_06408at 5.637 kb on + strand, within H281DRAFT_06408at 5.638 kb on - strand, within H281DRAFT_06408at 5.638 kb on - strand, within H281DRAFT_06408at 5.709 kb on + strand, within H281DRAFT_06408at 5.709 kb on + strand, within H281DRAFT_06408at 5.709 kb on + strand, within H281DRAFT_06408at 5.709 kb on + strand, within H281DRAFT_06408at 5.710 kb on - strand, within H281DRAFT_06408at 5.710 kb on - strand, within H281DRAFT_06408at 5.738 kb on + strand, within H281DRAFT_06408at 5.761 kb on - strand, within H281DRAFT_06408at 5.829 kb on - strand, within H281DRAFT_06408at 5.869 kb on + strand, within H281DRAFT_06408at 5.869 kb on + strand, within H281DRAFT_06408at 5.869 kb on + strand, within H281DRAFT_06408at 5.869 kb on + strand, within H281DRAFT_06408at 5.870 kb on - strand, within H281DRAFT_06408at 5.870 kb on - strand, within H281DRAFT_06408at 5.872 kb on - strand, within H281DRAFT_06408at 5.872 kb on - strand, within H281DRAFT_06408at 5.982 kb on + strand, within H281DRAFT_06408at 5.982 kb on + strand, within H281DRAFT_06408at 5.982 kb on + strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 5.983 kb on - strand, within H281DRAFT_06408at 6.129 kb on - strand, within H281DRAFT_06408at 6.129 kb on - strand, within H281DRAFT_06408at 6.156 kb on - strand, within H281DRAFT_06408at 6.185 kb on + strand, within H281DRAFT_06408at 6.185 kb on + strand, within H281DRAFT_06408at 6.781 kb on - strandat 6.781 kb on - strandat 6.782 kb on + strandat 6.782 kb on + strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.783 kb on - strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.954 kb on + strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 6.955 kb on - strandat 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.105 kb on + strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.106 kb on - strand, within H281DRAFT_06409at 7.108 kb on - strand, within H281DRAFT_06409at 7.175 kb on + strand, within H281DRAFT_06409at 7.175 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.283 kb on + strand, within H281DRAFT_06409at 7.284 kb on - strand, within H281DRAFT_06409at 7.312 kb on - strand, within H281DRAFT_06409at 7.387 kb on + strand, within H281DRAFT_06409at 7.387 kb on + strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.388 kb on - strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.432 kb on + strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strand, within H281DRAFT_06409at 7.433 kb on - strandat 7.433 kb on - strand, within H281DRAFT_06409

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,585 - +1.1
4,697 - -0.3
4,888 + H281DRAFT_06407 0.52 +0.1
4,888 + H281DRAFT_06407 0.52 +0.7
4,889 - H281DRAFT_06407 0.52 -0.1
4,889 - H281DRAFT_06407 0.52 +0.0
4,893 - H281DRAFT_06407 0.53 -0.1
4,893 - H281DRAFT_06407 0.53 +0.4
4,928 + H281DRAFT_06407 0.62 -0.4
4,928 + H281DRAFT_06407 0.62 -1.2
4,938 + H281DRAFT_06407 0.65 +0.5
4,938 + H281DRAFT_06407 0.65 +1.2
4,938 + H281DRAFT_06407 0.65 -1.2
4,938 + H281DRAFT_06407 0.65 +0.3
4,938 + H281DRAFT_06407 0.65 -1.4
4,942 + H281DRAFT_06407 0.66 -0.8
4,943 - H281DRAFT_06407 0.66 +0.9
4,943 - H281DRAFT_06407 0.66 -0.0
5,010 - H281DRAFT_06407 0.84 +0.4
5,108 + +0.2
5,370 + -0.8
5,370 + +0.8
5,445 + -1.4
5,445 + -0.6
5,445 + +2.2
5,448 + +0.9
5,466 + -0.3
5,467 - +0.9
5,577 + H281DRAFT_06408 0.13 +0.3
5,577 + H281DRAFT_06408 0.13 +0.4
5,635 + H281DRAFT_06408 0.18 +0.1
5,636 - H281DRAFT_06408 0.19 +1.6
5,637 + H281DRAFT_06408 0.19 +0.7
5,637 + H281DRAFT_06408 0.19 -1.2
5,637 + H281DRAFT_06408 0.19 -0.6
5,638 - H281DRAFT_06408 0.19 +0.1
5,638 - H281DRAFT_06408 0.19 +0.2
5,709 + H281DRAFT_06408 0.26 -0.6
5,709 + H281DRAFT_06408 0.26 -0.4
5,709 + H281DRAFT_06408 0.26 +0.5
5,709 + H281DRAFT_06408 0.26 +0.2
5,710 - H281DRAFT_06408 0.26 +0.2
5,710 - H281DRAFT_06408 0.26 +1.1
5,738 + H281DRAFT_06408 0.29 +1.0
5,761 - H281DRAFT_06408 0.31 -0.2
5,829 - H281DRAFT_06408 0.37 -0.2
5,869 + H281DRAFT_06408 0.41 -1.7
5,869 + H281DRAFT_06408 0.41 -1.3
5,869 + H281DRAFT_06408 0.41 +0.7
5,869 + H281DRAFT_06408 0.41 +1.6
5,870 - H281DRAFT_06408 0.41 +0.5
5,870 - H281DRAFT_06408 0.41 +1.6
5,872 - H281DRAFT_06408 0.42 +1.3
5,872 - H281DRAFT_06408 0.42 -0.1
5,982 + H281DRAFT_06408 0.52 +0.1
5,982 + H281DRAFT_06408 0.52 +1.4
5,982 + H281DRAFT_06408 0.52 -0.1
5,983 - H281DRAFT_06408 0.53 +0.8
5,983 - H281DRAFT_06408 0.53 +0.6
5,983 - H281DRAFT_06408 0.53 -0.9
5,983 - H281DRAFT_06408 0.53 -0.2
5,983 - H281DRAFT_06408 0.53 -0.2
5,983 - H281DRAFT_06408 0.53 -1.6
6,129 - H281DRAFT_06408 0.67 +0.6
6,129 - H281DRAFT_06408 0.67 -0.1
6,156 - H281DRAFT_06408 0.70 +0.6
6,185 + H281DRAFT_06408 0.72 +0.7
6,185 + H281DRAFT_06408 0.72 +0.6
6,781 - +0.6
6,781 - -1.1
6,782 + +0.2
6,782 + +1.1
6,783 - -0.1
6,783 - -0.3
6,783 - -0.8
6,783 - +0.3
6,783 - +1.0
6,783 - +0.6
6,954 + +0.2
6,954 + +0.2
6,954 + +0.5
6,954 + +0.4
6,955 - -0.1
6,955 - +0.1
6,955 - +0.7
6,955 - +1.5
6,955 - +0.0
6,955 - +1.7
6,955 - -0.1
7,105 + H281DRAFT_06409 0.28 +0.4
7,105 + H281DRAFT_06409 0.28 -0.7
7,105 + H281DRAFT_06409 0.28 -1.0
7,105 + H281DRAFT_06409 0.28 -0.9
7,105 + H281DRAFT_06409 0.28 -0.1
7,106 - H281DRAFT_06409 0.28 +1.9
7,106 - H281DRAFT_06409 0.28 -0.3
7,106 - H281DRAFT_06409 0.28 +0.4
7,108 - H281DRAFT_06409 0.29 -0.8
7,175 + H281DRAFT_06409 0.41 +2.2
7,175 + H281DRAFT_06409 0.41 -0.3
7,283 + H281DRAFT_06409 0.61 -0.3
7,283 + H281DRAFT_06409 0.61 +0.9
7,283 + H281DRAFT_06409 0.61 +0.4
7,284 - H281DRAFT_06409 0.62 -0.0
7,312 - H281DRAFT_06409 0.67 +0.6
7,387 + H281DRAFT_06409 0.81 -0.0
7,387 + H281DRAFT_06409 0.81 -0.3
7,388 - H281DRAFT_06409 0.81 +0.3
7,388 - H281DRAFT_06409 0.81 -1.2
7,388 - H281DRAFT_06409 0.81 -0.1
7,388 - H281DRAFT_06409 0.81 +0.1
7,388 - H281DRAFT_06409 0.81 -0.3
7,388 - H281DRAFT_06409 0.81 +0.5
7,432 + H281DRAFT_06409 0.89 +1.2
7,432 + H281DRAFT_06409 0.89 +0.6
7,432 + H281DRAFT_06409 0.89 +0.6
7,432 + H281DRAFT_06409 0.89 -0.1
7,433 - H281DRAFT_06409 0.90 -1.4
7,433 - H281DRAFT_06409 0.90 -0.1
7,433 - H281DRAFT_06409 0.90 -2.7
7,433 - H281DRAFT_06409 0.90 +0.0
7,433 - H281DRAFT_06409 0.90 -0.8
7,433 - H281DRAFT_06409 0.90 -1.9
7,433 - H281DRAFT_06409 0.90 +0.7
7,433 - H281DRAFT_06409 0.90 +0.1
7,433 - H281DRAFT_06409 0.90 -0.7
7,433 - H281DRAFT_06409 0.90 +0.7
7,433 - H281DRAFT_06409 0.90 -0.1
7,433 - H281DRAFT_06409 0.90 +0.3
7,433 - -0.9
7,433 - H281DRAFT_06409 0.90 -0.6

Or see this region's nucleotide sequence