Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05987

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05986 and H281DRAFT_05987 are separated by 272 nucleotidesH281DRAFT_05987 and H281DRAFT_05988 are separated by 425 nucleotides H281DRAFT_05986: H281DRAFT_05986 - transcriptional regulator, TetR family, at 128,720 to 129,355 _05986 H281DRAFT_05987: H281DRAFT_05987 - Thioredoxin reductase, at 129,628 to 130,521 _05987 H281DRAFT_05988: H281DRAFT_05988 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 130,947 to 131,810 _05988 Position (kb) 129 130 131Strain fitness (log2 ratio) -1 0 1 2at 128.770 kb on - strandat 128.964 kb on + strand, within H281DRAFT_05986at 129.195 kb on + strand, within H281DRAFT_05986at 129.195 kb on + strand, within H281DRAFT_05986at 129.195 kb on + strand, within H281DRAFT_05986at 129.946 kb on + strand, within H281DRAFT_05987at 130.130 kb on + strand, within H281DRAFT_05987at 130.131 kb on - strand, within H281DRAFT_05987at 130.131 kb on - strand, within H281DRAFT_05987at 130.190 kb on + strand, within H281DRAFT_05987at 130.195 kb on - strand, within H281DRAFT_05987at 130.337 kb on + strand, within H281DRAFT_05987at 130.418 kb on - strand, within H281DRAFT_05987at 130.672 kb on - strandat 130.753 kb on - strandat 130.863 kb on + strandat 130.863 kb on + strandat 130.919 kb on + strandat 130.920 kb on - strandat 131.033 kb on + strandat 131.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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128,770 - +0.9
128,964 + H281DRAFT_05986 0.38 +0.3
129,195 + H281DRAFT_05986 0.75 +0.5
129,195 + H281DRAFT_05986 0.75 +0.5
129,195 + H281DRAFT_05986 0.75 -0.0
129,946 + H281DRAFT_05987 0.36 +0.2
130,130 + H281DRAFT_05987 0.56 +0.4
130,131 - H281DRAFT_05987 0.56 +0.1
130,131 - H281DRAFT_05987 0.56 -0.1
130,190 + H281DRAFT_05987 0.63 +0.3
130,195 - H281DRAFT_05987 0.63 -1.0
130,337 + H281DRAFT_05987 0.79 -0.0
130,418 - H281DRAFT_05987 0.88 -0.8
130,672 - -0.8
130,753 - +0.7
130,863 + +0.3
130,863 + +1.8
130,919 + +1.1
130,920 - -1.5
131,033 + +0.2
131,033 + +0.6

Or see this region's nucleotide sequence